AMCG00020982 (xpo7,LOC107586117,LOC107678024)


Basic Information

Item Value
gene id AMCG00020982
gene name xpo7,LOC107586117,LOC107678024
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 40229942 ~ 40269290 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020982
GGGGGAGTGAGAGGAGCATGAATGGAGCAAAATGGCGGATCATGTGCAGAGCCTAGCCCAGCTAGAGATCCTGTGCAAGCAGCTCTATGAGACAACAGACACCACTACCAGGCTACAGGCGGAGAAAGCCCTGGTTGAGTTCACCAACAGCCCTGACTGTCTGAGCAAATGTCAGCTACTACTAGAGAGAGGGAGCGCACTAATTCAGCTGTATGCCCGGATCACCAAGCTGGGCTGGTTCGACTGCCAGAAGGAGGATTATGTCTTCAGAAATGTGATTGCAGACGTGACAAGGTTTCTGCAGGACAGTGTTGAGCACTGCATCATAGGCGTGACAATTCTGTCTCAGTTAACGAACGAAATTAACCAAGCAGACACAACACACCCGCTGACAAAGCATAGGAAAATAGCGTCCTCGTTCCGAGATTCTTCCCTGTTTGACATCTTTACGTTGTCTTGCAATTTACTAAAACAGGCCTCGGGCAAAAATCTGAATCTAAATGACGAGAGTCAGCACGGCCTCCTGATGCAGCTCCTCAAGCTGGCCCACAACTGCCTGAATTTCGACTTCATTGGGACCTCCACCGATGAGTCCTCGGACGACCTGTGCACAGTGCAGATTCCCACAAGCTGGAGATCAGcgTTCTTGGATTCCTCAACCCTGCAGctgttttttgatttgtatcATTCCATTCCTCCTTCCCTGTCACCCCTGGTCTTATCTTGCTTAGTACAAATCGCTTCTGTTCGGAGATCGCTGTTCAATAATGCAGAGAGAGCAAAGTTCCTGTCACACTTAGTTGATGGAGTGAAAAGGATTCTGGAAATCCCCCAGAGCCTGTCGGACCCAAACAATTACCATGAGTTCTGTCGATTGCTGGCGAGGCTGAAAAGTAACTACCAGCTAGGAGAGCTCGTCAAGGTGGAGAACTACCCTGAAGTGATCCGGTTAATAGCCAACTTCACAGTGACCAGCCTGCAGCACTGGGAATTTGCCCCCAACAGTGTCCATTACCTCCTGAGTCTGTGGCAGCGCTTGGCAGCCTCTGTGCCCTATGTGAAGGCCACTGAGCCACACATGCTGGAGACCTACACCCCAGAGGTCACCAAGGCGTACATCACCTCTCGCCTGGAATCCGTCCATATCATACTCAGAGATGGCCTGGAAGACCCCTTGGATGACACAGGACTGGTCCAGCAACAGCTTGACCAACTGTCAACCATTGGGCGTTGTGAGTACGAAAAGACGTGTGCCCTCTTGGTCCAGCTGTTTGACCAGTCCGCCCAGTCCTATCAGGAGCTTCTGCAGTCCAGTAACGCCAGTGCAATGGACATCGCCGTACAGGAGGGTCGATTGACGTGGCTGGTGTACATCATTGGAGCAGTGATTGGTGGGAGAGTGTCTTTTGCGAGCACAGACGAACAGGACGCCATGGACGGAGAGCTAGTAGTACTGCAGCTGATGAATCTGACGGACTCTCGCCTTGCACAAGCAGGAAACGAAAAGCTGGAACTTGCCATGCTCAGCTTCTTCGAGCAGTTTCGGAAAATCTACATAGGAGACCAGGTGCAAAAATCCTCTAAGCTGTATCGGCGACTGTCTGAAGTTCTGGGGCTGAATGATGAGACCATGGTACTCAGTGTGTTCATCGGGAAAATAATCACCAATCTGAAATACTGGGGACGGTGTGAACCCATAACTTCCAAGACCCTTCAGCTCCTCAACGACTTCAGTGTTAGGAAGCTAGTGAAACTCAGCGCTGTTCAGTTTATGCTGAATAACCACACTAGCGAACACTTTTCTTTCCTGGGCATTAACAATCAATCAAACCTCAGCGACATGAGGTGTCGGACCACATTCTACACAGCACTGGGCAGATTGCTTATGGTGGATTTAGGTGAGGATGAGGACCAGTTTGAGCAGTTCATGTTGCCCCTGACAGCTGCATTCGAAGCTGTGGCACAGATGTTCAGCACCAACACCTTCAACGAGCAAGAAGCTAAaAGGACACTGGTGGGCCTGGTTAGAGATTTAAGAGGGATCGCCTTTGCGTTCAATGCCAAGACCAGCTTCATGATGCTCTTCGACTGGATTTATCCCTCTTACATGCCAATACTGCAGCGAGCCATTGAGCTGTGGTACCATGACCCTGCTTGCACTACACCAGTTCTCAAACTAATGGCTGAACTTGTTCACAATAGgtCACAAAGATTGCAGTTTGATGTGTCATCGCCTAATGGAATCCTGCTTTTCAGAGAGACCAGTAAGATGATAACTACATATGGCAATCGGATTCTAACACTAGGGGAAGTCCCAAAGGATCAAGTTTATGCACTAAAATTAAAAGGGATCTCGATCTGCTTCTCCATGTTGAAAGCCGTGCTGAGTGGCAACTACGTGAACTTCGGTGTGTTCCGCCTATATGGGGACGATGCACTGGACAATGCCTTACAGACCTTCATCAAGCTACTGCTCTCCATCCCGCACAGCGACTTACTGGATTATCCCAAACTCAGTCAGTCATATTATTCCTTGTTGGAAGTACTTACCCAAGACCACATGAACTTTATCGCCAGCTTGGAACCTCACGTCATCATGTACATTCTCTCTTCTATCTCTGAGGGACTCACAGCACTTGACACAATGGTATGTACAGGATGTTGCTCCAGCTTAGACCACATAGTAACGTATCTATTTAAGCAGCTATCCCGCAGCACAAAGAAAAGGTCAGCATCTATGGCGCAAGAAAGCGACCGGTTCTTGCATATAATGCAGCAGCACCCAGAAATGATACAGCAGaTGCTATCAACTGTACTCAATATAATCATTTTTGAGGACTGTAGGAATCAGTGGTCCATGTCTCGACCCTTGCTGGGCTTGATTCTGCTAAACGAGAAGtATTTTGCTGACTTGAGAAACAGTATAGTGAACAGCCAACCTCCTGAAAAGCAGCAGGCCATGCACTTATGCTTTGAAAATCTAATGGAGGGCATTGAACGCAACTTACTCacaaaaaacagagacagGTTTACACAGAACCTCTCAGTATTTAGAAGAGAAGTGAACGACTCAATGAAGAACTCCACGTACGGTGTAAACAGCAACGACATGATGAGCTGACATTCCACAGAACCCCAGAGAACAGAGGAACTCTCCAGTggcctggctgcccagagaATCCCACAATTCCCCCGAGTGCGAGATTCTGAACAAACCATACCCCCGTCTCACCCAATCTTGCCTCCCTCCccttttcttattcttttctttttcttttcttttttttatttttttattttaatgtcctcCAATGGTCTCGATCCTGACCTGGCTTTGGACACTTGGAGGCCTCGAGtccaaagagaaaaagaaaagaaaagtaatctaagaaggtgtgtgtgtttgtgggtttgtgtgAAAGGGGTTTATTGCTTGAATGAGAGAAAGTGAAGTGGTgttggaggaggagggagggggccCGCACATGGacttgaaaaagtgaaaaaaatttCCTATCAAAACCCCttgaaatatgtgtgtgtgtgtgtgtgtttgtggggggagggaggggagtgtGGTTGTATCTGTAGTACTCTGCTTCTGCCTGccttgtataaaaaaaaaaacaacaacggaaaaagtgtacattttttcataacattttgaacaatgtttataataattcaatttaaaaacgaaaaaaaaaaaaaaagaaaaaaaagtgtgattgAAATTTTTACCGAATCTAGTAGTGAAACAGTGCTGAAGTGAGGGGTTGTCTGTGTATGAGGAGCAaagcaaaaatatacaaaaaaatgaaatggatgatatataatattgaaatagAGTGTGTGGAAATGGATGGTTGAGCATGTTGGGGGGTTGGAGGGGGTGGATTTCAAAATGTGAACCTGgtgtatattttactgtaacCTCACGGTCGACCCAAGTATAGcaacatttgtaaatatacGAATTCCCTTtgcagatgtaaaaaaaaaaaaaaaagacgacaaaaaaaaaaac

Function

symbol description
xpo7 Predicted to enable nuclear export signal receptor activity. Predicted to be involved in protein export from nucleus. Predicted to act upstream of or within intracellular protein transport and nuclear transport. Predicted to be part of nuclear pore. Predicted to be active in cytoplasm. Is expressed in heart. Orthologous to human XPO7 (exportin 7).

NR:

description
Xpo7 protein

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K18460 XPO7, EXP7; exportin-7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020982 True 4027 mRNA 0.46 27 40229942 40269290

Neighbor

gene id symbol gene type direction distance location
AMCG00020983 NA coding upstream 175 40211142 ~ 40229767 (+)
AMCG00020981 NA coding upstream 166257 39801279 ~ 40063685 (+)
AMCG00020976 NA coding upstream 543624 39617308 ~ 39686318 (+)
AMCG00020978 NA coding upstream 612779 39615454 ~ 39617163 (+)
AMCG00020973 NA coding upstream 1168131 39047260 ~ 39061811 (+)
AMCG00020990 NA coding downstream 8032 40277322 ~ 40284496 (+)
AMCG00020988 fgf17,LOC106585328,LOC106580010 coding downstream 42230 40311520 ~ 40319723 (+)
AMCG00020989 NA coding downstream 99944 40369234 ~ 40386635 (+)
AMCG00020987 NA coding downstream 129646 40398936 ~ 40431760 (+)
AMCG00020994 NA coding downstream 168048 40437338 ~ 40456772 (+)
G67048 NA non-coding upstream 480581 39749157 ~ 39749361 (+)
G67027 NA non-coding upstream 924355 39305297 ~ 39305587 (+)
G66995 NA non-coding upstream 1180311 39049421 ~ 39049631 (+)
G66970 NA non-coding upstream 1219093 39010579 ~ 39010849 (+)
G66887 NA non-coding upstream 1804690 38424712 ~ 38425252 (+)
G67180 NA non-coding downstream 301037 40570327 ~ 40571722 (+)
G67182 NA non-coding downstream 304264 40573554 ~ 40574856 (+)
G67207 NA non-coding downstream 516471 40785761 ~ 40791471 (+)
G67221 ppp3ccb,LOC107678020,LOC107553709,LOC107720725,LOC107586120,LOC107705087,LOC103046193 non-coding downstream 680809 40950099 ~ 40965912 (+)
G67272 NA non-coding downstream 769564 41038854 ~ 41039096 (+)
AMCG00020954 NA other upstream 2092869 38117062 ~ 38137073 (+)
AMCG00020942 NA other upstream 2654086 37567036 ~ 37575856 (+)
G66551 NA other upstream 3312506 36914815 ~ 36917436 (+)
G66506 NA other upstream 3973431 36254699 ~ 36256511 (+)
G66362 NA other upstream 4321540 35867393 ~ 35908402 (+)
G67108 LOC100846954 other downstream 51823 40321113 ~ 40321821 (+)
AMCG00020993 atad1,atad1a,LOC105014378,LOC108414574,LOC106580455,LOC103365845,LOC107087860,LOC102796919,LOC101479261,LOC100705680,LOC106527948,LOC105919473 other downstream 286676 40555966 ~ 40570215 (+)
AMCG00021005 LOC106580519 other downstream 782182 41051472 ~ 41062527 (+)
G67323 NA other downstream 1328933 41598223 ~ 41602113 (+)
G67459 NA other downstream 1783640 42052930 ~ 42053675 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000304_08547909_08562342 XPO7 coding CI01000304 null 8547909 ~ 8562604 (+)