AMCG00020988 (fgf17,LOC106585328,LOC106580010)


Basic Information

Item Value
gene id AMCG00020988
gene name fgf17,LOC106585328,LOC106580010
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 40311520 ~ 40319723 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020988
GGGTTTGTTAAGCCGCGGTTCATTAGCCCCCCTACAGTAGCCAGAAACCATCTCTGATAAAGCTGCGCTGCTTTTCCCAGGTGACACCAGTTAGTTCCCAGTTGCCCACCCACCCACTGGACCCCCCGTTTCCCTATGCAGGGGAGGGCCTCGCCGCCTCTCATTTTTCACCTTCGCTCCACAGCGAGTGACCGAGCCGCGCAGGACACGGAGAGCCTCTTTAATTTGGATCCATCTGCGGACGCGCTGACAGTACGGATCCAGAGCCGGCCGGTGGATGTGGAGCGCTTTCTATTCCCATCACTATCTAATTGCGTTCACTCGGCTTTTCCAAAATACTCGTTATTAACTGCGGGCTGGACAACTTGATTTCTATATAAGACCTAAGATAATGGCATTTCACGGCTCGCCAGGCAGCAAATGTGAATTGGAAGTGAATAATCAGCCAATCTATTTCGGCTTCGCTCTCGTATTGACATGGGATTAACATGTAGTCTCGGTCTCTGATGCTGTCACCGAAGTTTGTTCAATGCGTGGACTTGAGGAGGAAAGGAAGAAGGAAGCCTGAATTTTAATAACTGCGATTATCTATTTTGATGGATTTAGATTGATCCCGGTAACGGACGGGTGAGGGTGAAATTGGGAAATTCTCGaaaggacatttttaaagaccATTCTGCTGGATTAACACCTTTCCGAGATTTTGGAACAAACATTTGcagtttctgaaaaaaaaaacttttcttttgGATGAACCTAAAGGATCACCAACAATGCAGGCAATAAACCAACGCTCAATTTACATGTCATTTCACTTTCTAGTCTTGTGGTGTCATGCTCAGgggGAGTATCACCCGTCTCCTAATTTTAACCAGTATGTGAGGGAGCAGGGCGCTGCGACGGACCAGCTCAGCCGGAGACAGGTCCGCGTCTACCAGCTGTACAGCCGGACCAGCGGCAAACACGTCCAGATCCAGGGCAAGAAGATCAGCGCCACCGCCGAGGACGGCAACTCGTTCGCACGGCTATTTGTGGAGACGGACACTTTTGGCAGTCGAGTGAGGATTAAAGGAGCAGAGAGTGGACACTTCCTGTGCATGAACCGGAAAGGAAAGCTCATTGGAAagCCCAGCGGGAGAAGCAAGGACTGCATCTTCACTGAGATCGTGCTGGAGAACAACTACACAGCCTTCCAGAACGCCAAGTACGAGGGCTGGTACGTGGCATTCTCCAGGAAAGGCCGACCCATAAAGGCCTCAAAGACTCGGGAGAACCAGAGGGAGGTCCATTTTATCAAGAGGCTCCATAAGGGTCCGCCGCCTTTCCCTAACCTTGACCGAGAAAACACCTTTGAGTTCATCAGCTTCCCACCTACGAGACGTGCCAAACGCAACAGGAAGACGAGAACTTCCCCCTAACGCAGAGCTGTGTGTAAATAGGACTGGTctgatttttcatatttttaaaaataaaagagaaggtaaagattttatttttatattaatacttttaaatgccaacgtgttttttttcttttttatatgtaatattgTCTCTTTGTACATAAAGTAAGAGGGTAAtgaaatgaatgtatatatttaatattgctGTTTGTCTTAGCGTTTGCCTTGGAGGGATTATTGATGGTGGGGAGTGGGAGAGGAAGATGCACCAATAAAAAATCCTTATTCAA

Function

symbol description
fgf17 Predicted to enable growth factor activity; type 1 fibroblast growth factor receptor binding activity; and type 2 fibroblast growth factor receptor binding activity. Involved in mesoderm development and nervous system development. Acts upstream of or within anterior/posterior pattern specification and negative regulation of endodermal cell fate specification. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and extracellular space. Is expressed in several structures, including blastomere; cardiovascular system; forebrain; paraxial mesoderm; and sensory system. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 20 with or without anosmia. Orthologous to human FGF17 (fibroblast growth factor 17).

NR:

description
PREDICTED: fibroblast growth factor 17

GO:

id name namespace
GO:0007498 mesoderm development biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0042664 negative regulation of endodermal cell fate specification biological_process
GO:0005576 extracellular region cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04358 FGF; fibroblast growth factor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020988 True 1693 mRNA 0.47 5 40311520 40319723

Neighbor

gene id symbol gene type direction distance location
AMCG00020990 NA coding upstream 27024 40277322 ~ 40284496 (+)
AMCG00020982 xpo7,LOC107586117,LOC107678024 coding upstream 42230 40229942 ~ 40269290 (+)
AMCG00020983 NA coding upstream 81753 40211142 ~ 40229767 (+)
AMCG00020981 NA coding upstream 247835 39801279 ~ 40063685 (+)
AMCG00020976 NA coding upstream 625202 39617308 ~ 39686318 (+)
AMCG00020989 NA coding downstream 49511 40369234 ~ 40386635 (+)
AMCG00020987 NA coding downstream 79213 40398936 ~ 40431760 (+)
AMCG00020994 NA coding downstream 117615 40437338 ~ 40456772 (+)
AMCG00020995 NA coding downstream 170963 40490686 ~ 40530054 (+)
AMCG00020996 NA coding downstream 224367 40544090 ~ 40554656 (+)
G67048 NA non-coding upstream 562159 39749157 ~ 39749361 (+)
G67027 NA non-coding upstream 1005933 39305297 ~ 39305587 (+)
G66995 NA non-coding upstream 1261889 39049421 ~ 39049631 (+)
G66970 NA non-coding upstream 1300671 39010579 ~ 39010849 (+)
G66887 NA non-coding upstream 1886268 38424712 ~ 38425252 (+)
G67180 NA non-coding downstream 250604 40570327 ~ 40571722 (+)
G67182 NA non-coding downstream 253831 40573554 ~ 40574856 (+)
G67207 NA non-coding downstream 466038 40785761 ~ 40791471 (+)
G67221 ppp3ccb,LOC107678020,LOC107553709,LOC107720725,LOC107586120,LOC107705087,LOC103046193 non-coding downstream 630376 40950099 ~ 40965912 (+)
G67272 NA non-coding downstream 719131 41038854 ~ 41039096 (+)
AMCG00020954 NA other upstream 2174447 38117062 ~ 38137073 (+)
AMCG00020942 NA other upstream 2735664 37567036 ~ 37575856 (+)
G66551 NA other upstream 3394084 36914815 ~ 36917436 (+)
G66506 NA other upstream 4055009 36254699 ~ 36256511 (+)
G66362 NA other upstream 4403118 35867393 ~ 35908402 (+)
G67108 LOC100846954 other downstream 1390 40321113 ~ 40321821 (+)
AMCG00020993 atad1,atad1a,LOC105014378,LOC108414574,LOC106580455,LOC103365845,LOC107087860,LOC102796919,LOC101479261,LOC100705680,LOC106527948,LOC105919473 other downstream 236243 40555966 ~ 40570215 (+)
AMCG00021005 LOC106580519 other downstream 731749 41051472 ~ 41062527 (+)
G67323 NA other downstream 1278500 41598223 ~ 41602113 (+)
G67459 NA other downstream 1733207 42052930 ~ 42053675 (+)

Expression


Co-expression Network