AMCG00020991


Basic Information

Item Value
gene id AMCG00020991
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 40454892 ~ 40458463 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020991
ATGATGGATTCTTCTGTAACAATAGAAGACAGGGTGGAGAAGATTATAAATGGTGACGGTTTTGCTGTGCAAGAGTTCGATTCGGCATATGAAATGCAGTCAGTTGCCATAAGAAAAAATACCTGCTATATCGTCTGTGCTGTCATCTTCAACGAAAAGAATGACGTGCTGATGATGCAGGAAGCAAAACCCAGCTGCTACCAGCAGTGGTACCTTCCAGCAGGCCGAATGGAGGAGAACGAGAGCATCGTGGAGGGGATGAGgagggaggtgagagaggagagcgGACTGGACTGTGAGCCCATCACCCTGCTACTCGTACAAGAGAACGGCCCTCAGTGGATCCGATTTACCTTTCTGGCACAAGTTTCAGGAGGCTCCATGAAGACCACAGCAGAAGCTGATGAGGAATCTCTCCAGGCCATGTGGTGGGACAGAGTGTCCTCGCTCCCACTGCGAGCCCGCGACATCCTCCCCCTGATCGAGGCAGGTCTGAGGTACAAAGAGATGACCTGCTTCCCTCCCACCCTGCCTGTGGACACCCCCAGCCATGTGCTGTGTCAGAGGCTGATTGTGACATTCACAGACACCAATAGGGATCTGTGGCTATTGCTCGGGACAGGCAAGGACTTACATCTCCCGGTCACAGTCTCTGGTGTAGGCCCGTCTGAGAGGTCCTGCTATCTTGCATTTGCCGTTCGCAGGCTCATGAAGGAGTGTATGCCGCTGTCACAAGTCAGTGTGAAAACACAGGGCATCTTTGGGCTCCAACATCATGGAAAGGATCCAGGGAAAACGGATGGCATCTGTTTCAATACGCTGATCTCCGTTGAATACAAACTCGAGGCAGTGGCAGTGGTACACACGGAAGCCCCACCAGCACTGGAGAGTGAAAAGTTTCGGTGGTACAAAGTGGATGATCCAGGTTTAAAAGCCAAGGTTGAGCAACGGCTGGTCTCGAGGTCAGTGATTCCCTTTCATAGCCTGTTCTAA

Function

GO:

id name namespace
GO:0046057 dADP catabolic process biological_process
GO:0046067 dGDP catabolic process biological_process
GO:0046712 GDP catabolic process biological_process
GO:0044715 8-oxo-dGDP phosphatase activity molecular_function
GO:0044716 8-oxo-GDP phosphatase activity molecular_function
GO:0044717 8-hydroxy-dADP phosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K17817 NUDT18, MTH3; 8-oxo-dGDP phosphatase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020991 True 993 mRNA 0.52 3 40454892 40458463

Neighbor

gene id symbol gene type direction distance location
AMCG00020984 pbdc1,LOC106568135 coding downstream 179254 40269641 ~ 40275638 (-)
AMCG00020985 NA coding downstream 227221 40211543 ~ 40227671 (-)
AMCG00020986 NA coding downstream 262856 40171430 ~ 40192036 (-)
AMCG00020980 gfra2,gfra2b,LOC105911104 coding downstream 716552 39735434 ~ 39738340 (-)
AMCG00020979 NA coding downstream 777565 39676917 ~ 39677327 (-)
AMCG00020992 NA coding upstream 71695 40530158 ~ 40530610 (-)
AMCG00020998 LOC103141401,LOC108234925,LOC104934772,LOC106944545,LOC106529513 coding upstream 203463 40661926 ~ 40729626 (-)
AMCG00021004 NA coding upstream 539344 40997807 ~ 40999658 (-)
AMCG00021003 NA coding upstream 541717 41000180 ~ 41004194 (-)
AMCG00021006 NA coding upstream 634406 41092869 ~ 41142694 (-)
G67103 NA non-coding downstream 163166 40291518 ~ 40291726 (-)
G67080 NA non-coding downstream 247455 40207179 ~ 40207437 (-)
G67058 NA non-coding downstream 449434 39895419 ~ 40005458 (-)
G67056 LOC103376870 non-coding downstream 525621 39824870 ~ 39929271 (-)
G67032 NA non-coding downstream 927293 39495835 ~ 39527599 (-)
G67181 NA non-coding upstream 111864 40570327 ~ 40571996 (-)
G67183 NA non-coding upstream 114558 40573021 ~ 40574856 (-)
G67246 NA non-coding upstream 382640 40841103 ~ 40904117 (-)
G67252 LOC103376870 non-coding upstream 442927 40901390 ~ 40902331 (-)
G67273 NA non-coding upstream 580345 41038808 ~ 41039096 (-)
AMCG00020970 NA other downstream 1350025 39047704 ~ 39104867 (-)
AMCG00020943 NA other downstream 2822316 37631777 ~ 37632576 (-)
AMCG00020922 NA other downstream 3387087 37061595 ~ 37067805 (-)
AMCG00020923 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 3408953 37020011 ~ 37045939 (-)
AMCG00020911 NA other downstream 4172363 36260993 ~ 36282529 (-)
AMCG00020997 atad1a,LOC106580455,LOC105890049,LOC105014378,LOC107656802,LOC108414574 other upstream 98667 40557130 ~ 40640339 (-)
AMCG00021012 NA other upstream 1137617 41596080 ~ 41602270 (-)

Expression


Co-expression Network