AMCG00020997 (atad1a,LOC106580455,LOC105890049,LOC105014378,LOC107656802,LOC108414574)


Basic Information

Item Value
gene id AMCG00020997
gene name atad1a,LOC106580455,LOC105890049,LOC105014378,LOC107656802,LOC108414574
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 40557130 ~ 40640339 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020997
ATGGACAGACAGTTTGGGGATACAATGTTCTGCCAGCAATGGTACCACACCTCGTGTCTGGGAATAAGAGAGACTTCACCACAGCAAAAGAAGATGAACAGTGGAAGGAGCCTCTTTGCCACCTTGATAGCCAAAGCCACAGCCAAGGCCTCGGGCTGTCAGTTCATCAACCTGCAGGCCTCCACGCTGACGGACAAGTGGTATGGAGAGTCGCAGAAACTCACTGCTGCAGTCTTTTCCCTGGCTGTTAAAATCCAGCCCTGCATCATCTTCATCGACGAGATTGACTCCTTTTTGCGCAATCGCTCCAGTCTGGACCATGAAGCCACAGCCATGATGAAAGCTCAGTTCATGAGTCTGTGGGATGGACTGGAGACTGGCTCAGATTCCCAGGTGATGGTGATGGGAGCCACAAACAGGCCTCAGGATGTGGACCCGGCCATACTTCGCAGGATGCCTACAACCTTCCAGATCAACCTACCTGTCATGGATGGTGTCACCTTGGGGCGGCTGGAAGAGCTTGGAGCCTGTGAATAA
>TU83930
AGGTGTCTTGCTCTATGGGCCCCCGGGCTGTGGGAAGACCTTGATAGCCAAAGCCACAGCCAAGGCCTCGGGCTGTCAGTTCATCAACCTGCAGGCCTCCACGCTGACGGACAAGTGGTATGGAGAGTCGCAGAAACTCACTGCTGCAGTCTTTTCCCTGGCTGTTAAAATCCAGCCCTGCATCATCTTCATCGACGAGATTGACTCCTTTTTGCGCAATCGCTCCAGTCTGGACCATGAAGCCACAGCCATGATGAAAGCTCAGTTCATGAGTCTGTGGGATGGACTGGAGACTGGCTCAGATTCCCAGGTGATGGTGATGGGAGCCACAAACAGGCCTCAGGATGTGGACCCGGCCATACTTCGCAGGATGCCTACAACCTTCCAGATCAACCTACCTGTAAGAATGAACTTGCATTCAGTCCCACTCCAAGCCGGCAAATGTGTtgattgttctttgttttacaCCTTCATATGTTACCCA

Function

symbol description
atad1a Predicted to enable ATP binding activity. Predicted to be located in mitochondrial outer membrane; peroxisomal membrane; and postsynaptic membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in hyperekplexia 4. Orthologous to human ATAD1 (ATPase family AAA domain containing 1).

NR:

description
PREDICTED: ATPase family AAA domain-containing protein 1-A-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005777 peroxisome cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020997 True 537 mRNA 0.53 6 40557130 40640339
TU83930 False 484 lncRNA 0.52 3 40559091 40561130

Neighbor

gene id symbol gene type direction distance location
AMCG00020992 NA coding downstream 26520 40530158 ~ 40530610 (-)
AMCG00020991 NA coding downstream 98667 40454892 ~ 40458463 (-)
AMCG00020984 pbdc1,LOC106568135 coding downstream 281492 40269641 ~ 40275638 (-)
AMCG00020985 NA coding downstream 329459 40211543 ~ 40227671 (-)
AMCG00020986 NA coding downstream 365094 40171430 ~ 40192036 (-)
AMCG00020998 LOC103141401,LOC108234925,LOC104934772,LOC106944545,LOC106529513 coding upstream 21587 40661926 ~ 40729626 (-)
AMCG00021004 NA coding upstream 357468 40997807 ~ 40999658 (-)
AMCG00021003 NA coding upstream 359841 41000180 ~ 41004194 (-)
AMCG00021006 NA coding upstream 452530 41092869 ~ 41142694 (-)
AMCG00021008 NA coding upstream 726385 41366724 ~ 41367357 (-)
G67103 NA non-coding downstream 265404 40291518 ~ 40291726 (-)
G67080 NA non-coding downstream 349693 40207179 ~ 40207437 (-)
G67058 NA non-coding downstream 551672 39895419 ~ 40005458 (-)
G67056 LOC103376870 non-coding downstream 627859 39824870 ~ 39929271 (-)
G67032 NA non-coding downstream 1029531 39495835 ~ 39527599 (-)
G67246 NA non-coding upstream 200764 40841103 ~ 40904117 (-)
G67252 LOC103376870 non-coding upstream 261051 40901390 ~ 40902331 (-)
G67273 NA non-coding upstream 398469 41038808 ~ 41039096 (-)
G67277 NA non-coding upstream 411145 41051484 ~ 41052538 (-)
G67283 NA non-coding upstream 462380 41102719 ~ 41103224 (-)
AMCG00020970 NA other downstream 1452263 39047704 ~ 39104867 (-)
AMCG00020943 NA other downstream 2924554 37631777 ~ 37632576 (-)
AMCG00020922 NA other downstream 3489325 37061595 ~ 37067805 (-)
AMCG00020923 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 3511191 37020011 ~ 37045939 (-)
AMCG00020911 NA other downstream 4274601 36260993 ~ 36282529 (-)
AMCG00021012 NA other upstream 955741 41596080 ~ 41602270 (-)

Expression


Co-expression Network