AMCG00020998 (LOC103141401,LOC108234925,LOC104934772,LOC106944545,LOC106529513)


Basic Information

Item Value
gene id AMCG00020998
gene name LOC103141401,LOC108234925,LOC104934772,LOC106944545,LOC106529513
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 40661926 ~ 40729626 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020998
ATGTTCGCCACTTCAGGCGCAGAGCTCACCTTGAGTCACCGAGACGATGTTTGGGAAGCTTCTAATGCCACCACCCCAGTATATTCTGACAACAGCCACCCCACTGCCGCCTCGACCCCCAACGGGAGTCTGTCGTGCGGGGAGCAGATCGACTTCGGCCAGGCGGAGAGGATTATAATCGGGGTATTGCTGACCTTCATTACAGCGGTGACTGTGATGGGCAATACCTTAGTGGTGATAGCGGTGTGCGTGGTTAAGAAACTACGGCAGCCTTCCAACTACTTACTCGTGTCCCTGGCAGTAGCCGACCTGTCGGTAGCGGTGGCCGTCATGCCCTTTGTGATAGTGACGGACCTCACGGGCGGAGAGTGGCTGTTTGGAGAGGTGTTTTGCAACATCTTCATTGGCATGGATGTAATGTGCTGCACCGCATCCATAATGACGCTTTGTGTCATCAGCGTCGACAGGTACCTAGGCATCACCCGTCCCCTCACCTACCCTGCCAGGCAGAACGGGCAGCTGATGGCCAAGATGATTGTGGGTGTGTGGCTGGTGTCGGCTTCCATCACCCTGCCACCCTTCTGCGGCTGGGCACACAATGTCAACACGGCCGGAGTGTGCCTGATCAGCCAAGACTTCAGCTACACCATCTACTCCACTGCCGTGGCATTCTACATCCCCATGGCCGTCATGCTAATCATGTACTACAAGATCTTCAGGGCTGCCCGCAAGAGTGCCGCCAAGCACCGCTTTGCCGGCTTCCCCCGCCGCAATGACCTAGAGACGGTGGCAAGCGAGGGCCTGAAGATGCAGGGGCTGAAGCCTCCCGGGATGGCCGAGGAGTGCGCAGCCCTGTCCCGTCTGTTGAGCCGTGAGCGCAAGAACATCTCCATCTTCAAGCGGGAGCAGAAGGCAGCCACCACCTTGGGCGTGATCGTGGGTGTCTTCTCCATCTGCTGGCTGCCATTCTTCATCCTCTCCACCGCCCGGCCTTTCATCTGTGGCGTCTATTGCAGTTGCATCCCCATCTGGCTGGAGCGCACCCTGCTCTGGCTGGGCTATGCCAACTCTCTCATGAACCCTTTCATATACGCCTTCTTCAACCGCGACCTGCGCTCCACCTACAAGGACCTCTTGCGCTGCCGCTACCGCAACATCAACAGGCGCCTCTCTGCCGTTGGGGTACATGAGGCCCTGAAAGTTTAA

Function

NR:

description
PREDICTED: 5-hydroxytryptamine receptor 7-like

GO: NA

KEGG:

id description
K04163 HTR7; 5-hydroxytryptamine receptor 7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020998 True 1206 mRNA 0.58 2 40661926 40729626

Neighbor

gene id symbol gene type direction distance location
AMCG00020992 NA coding downstream 131316 40530158 ~ 40530610 (-)
AMCG00020991 NA coding downstream 203463 40454892 ~ 40458463 (-)
AMCG00020984 pbdc1,LOC106568135 coding downstream 386288 40269641 ~ 40275638 (-)
AMCG00020985 NA coding downstream 434255 40211543 ~ 40227671 (-)
AMCG00020986 NA coding downstream 469890 40171430 ~ 40192036 (-)
AMCG00021004 NA coding upstream 268181 40997807 ~ 40999658 (-)
AMCG00021003 NA coding upstream 270554 41000180 ~ 41004194 (-)
AMCG00021006 NA coding upstream 363243 41092869 ~ 41142694 (-)
AMCG00021008 NA coding upstream 637098 41366724 ~ 41367357 (-)
AMCG00021026 LOC108425180,LOC103036397,LOC106567972,LOC105015192 coding upstream 943983 41673609 ~ 41687703 (-)
G67183 NA non-coding downstream 87070 40573021 ~ 40574856 (-)
G67181 NA non-coding downstream 89930 40570327 ~ 40571996 (-)
G67103 NA non-coding downstream 370200 40291518 ~ 40291726 (-)
G67080 NA non-coding downstream 454489 40207179 ~ 40207437 (-)
G67058 NA non-coding downstream 656468 39895419 ~ 40005458 (-)
G67246 NA non-coding upstream 111477 40841103 ~ 40904117 (-)
G67252 LOC103376870 non-coding upstream 171764 40901390 ~ 40902331 (-)
G67273 NA non-coding upstream 309182 41038808 ~ 41039096 (-)
G67277 NA non-coding upstream 321858 41051484 ~ 41052538 (-)
G67283 NA non-coding upstream 373093 41102719 ~ 41103224 (-)
AMCG00020997 atad1a,LOC106580455,LOC105890049,LOC105014378,LOC107656802,LOC108414574 other downstream 21587 40557130 ~ 40640339 (-)
AMCG00020970 NA other downstream 1557059 39047704 ~ 39104867 (-)
AMCG00020943 NA other downstream 3029350 37631777 ~ 37632576 (-)
AMCG00020922 NA other downstream 3594121 37061595 ~ 37067805 (-)
AMCG00020923 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 3615987 37020011 ~ 37045939 (-)
AMCG00021012 NA other upstream 866454 41596080 ~ 41602270 (-)

Expression


Co-expression Network