AMCG00020999


Basic Information

Item Value
gene id AMCG00020999
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 40758497 ~ 40799108 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00020999
GAGTATTAACGGAAAGGTACTTTTCTGGTcgacacattttttgttttgtttcgtaaTGTTGTTCTAGCGGGAAGTTCACTTAATTTTCCTGAAAGAATCAGCGGAATTTGTATCAgCATCATAAAATATGGATCCCAATCAGCCGCGTTTCCCGAGGTTTCCTGGTACCCTCAGCATGCCGGGGCTGCCGACGCTGGGGCGGGGCAGGTCGCTGGTACCCGAGGAGCTGGCTTTAGGCCGTGCGCGAGGTCTGCCTTTGCCGGGCATGTCTGTGTTCGGCCGCGCCAGAGGATTCCCCGGTGATGAACCAGTCAAAAGTGAAGGATCATTCCAAAATGCGGAGCTCCCTCTTGGCCGAGCTAGGTTACCCACTGTGGAGCATGGTTTGGGGCGTGCAAGGGCAGTGATATTCCCTACAGTGGCGCCATCTGTTGGGCGAGCAAGATCTCCCCTTCCCACTACAGAGACAGACTTTGGGCACACAAGGGAGCTATCTACGTCCCCCGGTAGTGCCAAAGCACCCCCTGTCAGCCCAGCGAGAGTCTTGCCGCTACCTGAAGATGTGCCAGGCTTAGACGTGGTACAGGAAGCCGTAACCTCCCCCGTCAAGCGGTTGGAATCTCCTCTTAAACCTTCCCTTGTGTCATTGTTCCGGGGAATGGGCATTGAGCCTGAAGGAAGGATGTCCTGGGGCAGGGGGGCATCACCAGTGGTTGGGGCTCACCAGGCTTGGGGTGCGTTTGGTGATGTTGGAGTGGACCCCAAACCTCAAGTAACTCCTGCTGGAGAGTGGACTGGTCCCGGGGGAGAAGAGATCACAGAGGAGGCAAAGGGAGGCAGCAGTCCCCTGGGACACGGGGAGCCAGCCTCTCAGATGATGAGGGTGGGGCGAGGAAGTCCAGCTCCCTTGGGCTGGGGCAGAGGTTCCCCAACATCCCCCCTCTGTGTCCCTTCACCGACCTCAGCCCCCAGCCCAGCAGCagctccatctccatctcccaTCAGAGAGGCCGCCAAATCTCCAGAGCCCTTCCCTCAACTGACCACACACGTTGGAGAAGTCCAGAGAGAAGCCCCACATGAGCCACTACAGAAGAAAGGTTTGAAGGGAAGTCCTTTGACTCTTGCTTCAAACCACATCGCCATAAGCTGTAATAACGAAGCAGTCTTTCAGTACCATGTTACTTTCAGTCCTAGTGTGGAGTCCCGTGGTATGAGGTTCGGGATGTTGAAGGACCATGCGGCTGTGACAGGGGATGTTATTGCTTTCGATGGCTCCATTCTCTACCTCCCAATAAAGCTGAAGGAGGTCATTCACCTAAAAAGTGAGAGACGCACTGACAACCAAGAGATTGACATCAAGATTCAGATGACAAAAATCCTCCCACCAAACTCAGACCTGTGTTTGCCTTTCTACAATGTGGTGCTGCGAAGGGTAATGAAAATACTGGGACTCAAACTTGTTGGCCGAAATCACTATGACCCCACGAGCGCAGTAATTCTGGGAAAGCACAGGAATGTTATTTACCAGCAGAGCAGGGAGAGTTTTCAGGATGAATGTACCAAAGAACTGGTTGGCAACATTGTGATCACCCGCTACAATAACCGTACTTACCGAGTGGACAAAATCGACTGGACCAAGTCCCCTAAAGACACCTTCACCCTGACAGATGGGTCTAAGACCACTTTCATTGAGTACTACAGCAAAAACTATGGCATCTCCATCAAGGAGCTGGATCAGCCACTTCTTGTCCATTACCCTAAAGAAAGGTCCAAGCCTGGAGGAAAGATTATTACTGGAGAGATCTTGCTCCTTCCTGAGCTGTCCTTCATGACAGGGATCCCTGACAAGATGAGAAAAGACTTTCGAGCCATGAAGGACCTGACCATGCATATCAATGTGAGTGCTGAGCAACACACAAACTCTTTAAAGCAGCTTCTTCAAAACATCAAGAGCAACGAGGCAGCCCTGAAGGAACTCAGCCGCTGGGGTCTGTTAATTGGCTCCAAAATCCTTGTGTGTGACGGAAGGACGCTGCCTCAGGAGACTATCTGCCTGCAAGCAGCTTCATTTGTGACCTCTCCAGACGTCAGCTGGTCAAGAGAAGTAGTCAGGGACACCTCCATTAGCTGTATCCCTCTGAACTGCTGGGCCATCTTCTACCCCCGGCGCTGCTCTGATCAGGCAGAGGAGCTGGTGGCTACTTTTGGGAAAGTGGCGGGGCCCATGGGGCTGAGGTTGGGTCGCCCTATCCGCGTGGAGTTGAGGGATGACCGAACTGAGACCTATGTCAAGAGCGTCCACACACAGCTTACCAGCGAGCCTAATGTGCAGCTTGTGATCTGTATCATTACTGGCAACAGAGATGACCTCTACAGCGCGATAAAAAAACTCTGCTGCATTCAGACTCCTGTTCCTTCTCAGGCCATAAATGTGAGGACCATCTCCCAGCCTCAAAAACTGAGGAGTGTGGCCCAAAAGATCCTGTTGCAGATCAACTGCAAGCTAGGGGGAGAGCTTTGGAGTGTCAATGTTCCCCTGAAACATCTGATGGTGATTGGAGTTGACGTGCATCATGACTCAAACCGGAAGAACCGATCAGTCATGGGCTTTGTGGCCAGTGTTAACAATTCATTGACTAGATGGTATTCACGGGTCACATTCCAGATGCCCAATGAGGAGATTATAAATGGATTCCGAATCTGTCTCCTAGCTGGTTTGCAGAAGTATTTCGAGGTAAACCACTGCTTCCCCGAGAAGATTGTGGTGTACAGGGACGGAGTTTCAGACGGGCAGCTGAATACTGTGGAGAAGTACGAGATCCCGCAGTTGTTGAAGTGTTTCGAGACATTCCCCAACTACGAACCCAAGCTCGCCTTCATTGTGGTCCAGAAGAGGATCAGCACCACACTTTACTCTTGTTGTGGAGATCGCTTTGGCACCCCTCCCCCCGGGACAGTTTTGGACCACACCGTCACCAGCAAGGCCTGGGTTGATTTCTACTTAATGGCTCATCACATTCGCCAGGGTTGTGGTCTACCCACACACTACATTTCTCTATTGACCTATAAGATGTGCCACATGTACTGGAACTGGCCAGGAACTATCAGAGTCCCCGCACCCTGCAAATACGCTCACAAGCTGGCCTTTCTGTCAGGGCAGTATCTGCACTCTGAACCAGCAATCCAGCTCTCAGACAAGCTTTTTTTCCTGTGAACTCCACTGTCTATtctagtttatattttttattttttaactgtggGAACTGTAGTTCTGTTGTATCCACCTTCCCTACAGATTTGATTGCAGTACAGAAATTACAAcataccatttattttattttaacttggaATGAATCGCTTGAAGAAAGATTCACTACAGTTCTTATGGCCCTGTCCAATTATGTGTATATGAATACCTAGACTGGTGAAATGATAAATAAGGAGGaactaaaaacaattacatggtATTTGGCTGGGTGCCTTGCAGGTGAACTGTAATCTCTATTGGCACACCTGCTATTATCCTACACTGTAGGCATCTGAAACCAAATTAgtcatctgtctgtgtgttttatctCTGGTCCTTTCGTGGAGTTTAGGTGGATCTTTTCATAGGCTCTTCTTCAGTCAGAACTCaacatttgacatttatatGTAAAAGATGTTCAAATGCAGAGAATTCAGAAGTTTGGGGAAGGTATTATGGGGCAGTACAGGGTCTGCAGTGCCATGTGTTCCAGGAGtgtttaaatatagattttttaattttattttttatagaaagtGCAGATCTACGTAAGCAGACCATTGTTATGTGTTAATTTGATTTAGCCATGGGGGAAAAATGGCTGTTCTAGACATTATACTTTATGAAGTAGTGTTTTCTTAATAGGCTTACATATCGGCAGTTGGAGGCTCAGCACCAAATGCCTTTTTCTTAGCAACAGCCTTTGTGTTGAAATTCCAACTAGTTAAGTGCTGTTATAATCCACTTAAGTTCACTGTTCATTCTGTGGtgctagtttaaaaataactatcCCCCAGGTTGTTGGAAGTACAGTTGTAACATTCTAGTTTcttgcattaatgtattttgtttttttgttttgttttttcattacaaatgggAATTTGTGAAGGGTGCTAGTGCGATGCACTTATGGTAGCCTGTGAAGAAGGACAcattatttcaatacatttgaacaaatgtaattgttttgcttgttaattacagaaaaatgtaattcctaTTGTTTGTTATTCAACTGGAGTTGATACAGA

Function

GO:

id name namespace
GO:0010628 positive regulation of gene expression biological_process
GO:0030718 germ-line stem cell population maintenance biological_process
GO:0043046 DNA methylation involved in gamete generation biological_process
GO:0031047 gene silencing by RNA biological_process
GO:0000966 RNA 5'-end processing biological_process
GO:0010991 negative regulation of SMAD protein complex assembly biological_process
GO:0034587 piRNA metabolic process biological_process
GO:0071546 pi-body cellular_component
GO:0005634 nucleus cellular_component
GO:0005515 protein binding molecular_function
GO:0034584 piRNA binding molecular_function

KEGG:

id description
K02156 AUB, PIWI; aubergine

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00020999 True 4284 mRNA 0.48 22 40758497 40799108

Neighbor

gene id symbol gene type direction distance location
AMCG00020996 NA coding upstream 203841 40544090 ~ 40554656 (+)
AMCG00020995 NA coding upstream 228443 40490686 ~ 40530054 (+)
AMCG00020994 NA coding upstream 301725 40437338 ~ 40456772 (+)
AMCG00020987 NA coding upstream 326737 40398936 ~ 40431760 (+)
AMCG00020989 NA coding upstream 371862 40369234 ~ 40386635 (+)
AMCG00021000 NA coding downstream 23461 40822569 ~ 40838773 (+)
AMCG00021002 NA coding downstream 111327 40910435 ~ 40913147 (+)
AMCG00021001 NA coding downstream 125339 40924447 ~ 40939566 (+)
AMCG00021007 NA coding downstream 292125 41091233 ~ 41115596 (+)
AMCG00021010 NA coding downstream 412323 41211431 ~ 41212049 (+)
G67182 NA non-coding upstream 183641 40573554 ~ 40574856 (+)
G67180 NA non-coding upstream 186775 40570327 ~ 40571722 (+)
G67048 NA non-coding upstream 1009136 39749157 ~ 39749361 (+)
G67027 NA non-coding upstream 1452910 39305297 ~ 39305587 (+)
G66995 NA non-coding upstream 1708866 39049421 ~ 39049631 (+)
G67221 ppp3ccb,LOC107678020,LOC107553709,LOC107720725,LOC107586120,LOC107705087,LOC103046193 non-coding downstream 150991 40950099 ~ 40965912 (+)
G67272 NA non-coding downstream 239746 41038854 ~ 41039096 (+)
G67309 LOC105030512,LOC106569888 non-coding downstream 505079 41304187 ~ 41305221 (+)
G67310 NA non-coding downstream 533158 41332266 ~ 41397674 (+)
G67322 NA non-coding downstream 708499 41507607 ~ 41508101 (+)
AMCG00020993 atad1,atad1a,LOC105014378,LOC108414574,LOC106580455,LOC103365845,LOC107087860,LOC102796919,LOC101479261,LOC100705680,LOC106527948,LOC105919473 other upstream 188282 40555966 ~ 40570215 (+)
G67108 LOC100846954 other upstream 436676 40321113 ~ 40321821 (+)
AMCG00020954 NA other upstream 2621424 38117062 ~ 38137073 (+)
AMCG00020942 NA other upstream 3182641 37567036 ~ 37575856 (+)
G66551 NA other upstream 3841061 36914815 ~ 36917436 (+)
AMCG00021005 LOC106580519 other downstream 252364 41051472 ~ 41062527 (+)
G67323 NA other downstream 799115 41598223 ~ 41602113 (+)
G67459 NA other downstream 1253822 42052930 ~ 42053675 (+)
AMCG00021029 sfrp1,LOC104937559,LOC106585130,LOC105889956 other downstream 1624235 42423343 ~ 42465886 (+)

Expression


Co-expression Network