AMCG00021000


Basic Information

Item Value
gene id AMCG00021000
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 40822569 ~ 40838773 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021000
TTCAGGCTTTCATTCTGTTAACAAGAATCCAGTCACTTCATAGAGAGGCACAGGATACCTGAAGACAGATTCGTCAGAGTTCAGAGAGGACGTGTTTGCACTCCAGGTCCTTTCTCTTGAAGTCATGACCCAACGGCCTGGCCATGACTGTACCCAGCTGACAGTGAGCCTAGCCCTGCTGCTCTGCATGCTCTCAGCGGGGAGAGCAGGGGGCACAGAGGTGCCCTCTCCAGCTGAATTCCTCCAGGACTTGCTCTCCCGCTACGGCGACAACGACACCCTCTCTGTGCCCCAGTTGAGATCCCTGCTGGGACGGCTGGATGTGGGGCTGGGAAACAACACTACAGACCGACGTTCACCCAAGACCAACATCTCTAGGTGCCTCTCAACAGAGTCTCTCCTGGCAGCCCACAGTCTGAAGGAGGACTCTCGGGTGGATGGGCAGGGGCTGCAGGTGTTCTGCCCCACCATCCTGCAGCAGCTTCAGACAGGGGCCTGTGGGGTGGAAGCCAAGGAGGAGCAGGCCAAGGACCACCCCCAGGAGGTTGGGCCCACCTCTGCAGAAGTGTGGGGATTTGCTTTTCTCAGTGTGACACTGGTGAGCGCCTTCTCTCTGACTGGCGTGTTCGTGGTGCCCTGCATGAAGACACGCTTCATGCGCAGGGTGTTGATGTATTTCATCGCCCTATCCATCGGCACTCTCTTCTCCACTGCTGTCTTCCAGCTCATCCCAGAGGCATTTGGCTTCAACCCACTGGAAGATTACTATGTGTCCAAGTCGGCTGTGGTCTTCGGGGGCTTTTATCTTTTCTTCTTCACTGAGAAGGTTCTCAAAATGGTGCTGAAGCAAAAAGATGGGAAAGGCCACGGTCACAGTCACTACCCTGCTGAGCGCTACGCCTCCAAATCTGACATGGAGGATGGAGTAATGGAGAAGCTGCAGAACGGAGAGGTGGTGCCGCCTGCCCTCCCCGGGCCTGACGTAGAAGCCCGAGGCCTGAGCGAGGAAGGGAAGGTCCTCACGACCACCATGTCTGCCCAGGACTCTCAGAGTGCCCAGGGTGCATGCTACTGGCTGAAGGGGACTGCGTACTCGGACATCGGCACACTGGCCTGGATGATCACGTTAAGCGATGGGCTGCACAATTTCATAGACGGTCTTGCCATTGGAGCGTCCTTCACTGTGTCAGTCTTCCAGGGCATCAGCACCTCGGTGGCCATCCTGTGTGAGGAGTTCCCACACGAGCTTGGCGACTTTGTGATTCTGCTGAATGCAGGTATGAGTATTCAGCAAGCTCTGTTCTTTAACTTCATCTCCGCCTGCTGTTGTTATCTGGGCATGGGCTTCGGGATCCTTGCCGGCAGCCACTTCTCTGCCAACTGGATCTTTGCCCTGGCAGGGGGCATGTTCCTCTACATTGCCCTGGCAGACATGTTCCCTGAAATGAATGAGGTCAGTAAGGAAGAGGAAGGAGGGGTTGGCAGCTCCTTGGTGAGCTTTGCCATCCAGAATGCAGGCTTGCTGACTGGCTTTATCATCATGCTGCTTCTCACCATGTATTCGGGGCAGATACAGCTGGGATAGACCTGGGCTCAGGAGGGGCTCTGACTTTGGGACATCACACACCAGCCAGCAGGGCGCCTGGCCGGGCCTGGTCCCATCTGCCTAACTACCTTCTCTATGACCTGAACCTTTTctccaaaattattattattattattattattattattattattattattattattacttcctTTATACACTGCCCTAGAGATTCTTCAGCTCCAGAGGTCTACTTAAGCTACTGGAAATTGGATCATGGTGTATAAACGCTCCATGGAAACCTAATGTGGTGTTACAGAGTTATGCGAATGTCTGCTGGGTTTTAGTGTTTTGACAGGCTGTGATTTTGTAACCCAGCTTCCGGCAGAACAGCTTAAGAGGTTTGAGAGAACACAATCGCAGCTCTGCAAGTTCCGACGAATTCTCTTCACAGCTGTTTGGTCTAATGTCCGAGTGTAACCATGCTTCTGCAGTGCTCCAGCAAAGCTTCTCTGCTCCCATCCTATGAAGACTCAGGCTTTGTACTTCAACTGAGCCTTGACGATGTCTGGTTGCCATGGAGTATTAGATTATAATGGCCCTCGTTCACAAATGGAGGCCTTGTTTGTCAGTGAGCAAGTTTGGAAAGaccagcaaaaacaaatctctggGACTGAAACAAAGACCAAATACAGGCTGTTCTGTAGAGATGGCTTTTTTGTTGGGGGgtcctttttgtttatttgttgtttattttgtagctCTTCGCTGCCATAGCTTTACATtttggggcttttttttttttcataattgcTGCTTTGATGCAATTGCTTTTGTATACAGTGTGTCTCGTGTAGGTCTGCGGCTATTGCTAAGCCCTAAAGCACATTTGTCTGCTTGTGTGTTGTACAGCTAAAATTTGAAATGATGCAAGTGATATCTTCCAGGGAGAAGGAATCTAATTTTAGGGCTCTTGtcaagattaattaattaattaatattgtgtgtaggtgtgtgtgcataattacaataaaatactgaat

Function

GO: NA

KEGG:

id description
K14720 SLC39A14, ZIP14; solute carrier family 39 (zinc transporter), member 14

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021000 True 2589 mRNA 0.50 9 40822569 40838773

Neighbor

gene id symbol gene type direction distance location
AMCG00020999 NA coding upstream 23461 40758497 ~ 40799108 (+)
AMCG00020996 NA coding upstream 267913 40544090 ~ 40554656 (+)
AMCG00020995 NA coding upstream 292515 40490686 ~ 40530054 (+)
AMCG00020994 NA coding upstream 365797 40437338 ~ 40456772 (+)
AMCG00020987 NA coding upstream 390809 40398936 ~ 40431760 (+)
AMCG00021002 NA coding downstream 71662 40910435 ~ 40913147 (+)
AMCG00021001 NA coding downstream 85674 40924447 ~ 40939566 (+)
AMCG00021007 NA coding downstream 252460 41091233 ~ 41115596 (+)
AMCG00021010 NA coding downstream 372658 41211431 ~ 41212049 (+)
AMCG00021011 tcf7l1,LOC106585616 coding downstream 446161 41284934 ~ 41299165 (+)
G67207 NA non-coding upstream 31098 40785761 ~ 40791471 (+)
G67182 NA non-coding upstream 247713 40573554 ~ 40574856 (+)
G67180 NA non-coding upstream 250847 40570327 ~ 40571722 (+)
G67048 NA non-coding upstream 1073208 39749157 ~ 39749361 (+)
G67027 NA non-coding upstream 1516982 39305297 ~ 39305587 (+)
G67221 ppp3ccb,LOC107678020,LOC107553709,LOC107720725,LOC107586120,LOC107705087,LOC103046193 non-coding downstream 111326 40950099 ~ 40965912 (+)
G67272 NA non-coding downstream 200081 41038854 ~ 41039096 (+)
G67309 LOC105030512,LOC106569888 non-coding downstream 465414 41304187 ~ 41305221 (+)
G67310 NA non-coding downstream 493493 41332266 ~ 41397674 (+)
G67322 NA non-coding downstream 668834 41507607 ~ 41508101 (+)
AMCG00020993 atad1,atad1a,LOC105014378,LOC108414574,LOC106580455,LOC103365845,LOC107087860,LOC102796919,LOC101479261,LOC100705680,LOC106527948,LOC105919473 other upstream 252354 40555966 ~ 40570215 (+)
G67108 LOC100846954 other upstream 500748 40321113 ~ 40321821 (+)
AMCG00020954 NA other upstream 2685496 38117062 ~ 38137073 (+)
AMCG00020942 NA other upstream 3246713 37567036 ~ 37575856 (+)
G66551 NA other upstream 3905133 36914815 ~ 36917436 (+)
AMCG00021005 LOC106580519 other downstream 212699 41051472 ~ 41062527 (+)
G67323 NA other downstream 759450 41598223 ~ 41602113 (+)
G67459 NA other downstream 1214157 42052930 ~ 42053675 (+)
AMCG00021029 sfrp1,LOC104937559,LOC106585130,LOC105889956 other downstream 1584570 42423343 ~ 42465886 (+)

Expression


Co-expression Network