AMCG00021001


Basic Information

Item Value
gene id AMCG00021001
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 40924447 ~ 40939566 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021001
TGTGTGCTGTTCCTTTGGGTACTGAAGATCAACTATCCGAACACACTCTTCCTCCTCAGAGGGAACCACGAGTGCCGGCATCTCACAGAGTACTTCACCTTCAAACAGGAGTGTAAGATCAAATATTCAGAGAGCGTGTATGACGCCTGCATGGATGCGTTCGATTGCCTCCCCCTCGCTGCCCTCCTCAACCAGCAGTTCCTGTGCGTGCACGGCGGCCTGTCTCCAGAGATCAACTGCCTGGATGACATCAGGAAATTAGACAGGTTTAAGGAGCCCCCAGCATTCGGGCCAATGTGCGACTTGCTGTGGTCAGATCCCTCAGAGGACTACGGCAGCGAGAAGTCTGCAGAACACTTCAGTCACAACACTGTAAGAGGCTGCTCCTACTTCTACAGTTATCCAGCAGTATGTGACTTTTTGCTAAATAATAACTTGTTGTCAGTAATAAGGGCACATGAAGCTCAAGATGCCGGGTACCGAATGTACAGAAAAAGCCAAACGACGGGGTTCCCCTCGTTAATTACAATTTTCTCCGCACCAAACTACTTAGATGTGTACAACAACAAAGTAACAGAGATGCTTGTTAACGTCCTGAACATCTGTTCCGATGACGAGCTCATGTCGGAAGGAGATGATACCTGTGAAGGTAAGATGCTGAACTCAGAGACCGGGGCAgtgtaa

Function

GO: NA

KEGG:

id description
K04348 PPP3C, CNA; serine/threonine-protein phosphatase 2B catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021001 True 684 mRNA 0.49 6 40924447 40939566

Neighbor

gene id symbol gene type direction distance location
AMCG00021002 NA coding upstream 11300 40910435 ~ 40913147 (+)
AMCG00021000 NA coding upstream 85674 40822569 ~ 40838773 (+)
AMCG00020999 NA coding upstream 125339 40758497 ~ 40799108 (+)
AMCG00020996 NA coding upstream 369791 40544090 ~ 40554656 (+)
AMCG00020995 NA coding upstream 394393 40490686 ~ 40530054 (+)
AMCG00021007 NA coding downstream 151667 41091233 ~ 41115596 (+)
AMCG00021010 NA coding downstream 271865 41211431 ~ 41212049 (+)
AMCG00021011 tcf7l1,LOC106585616 coding downstream 345368 41284934 ~ 41299165 (+)
AMCG00021014 ube2d4,UBE2D4,LOC108265473,LOC103381447,LOC107717106 coding downstream 429061 41368627 ~ 41370418 (+)
AMCG00021016 NA coding downstream 519911 41459477 ~ 41518845 (+)
G67207 NA non-coding upstream 132976 40785761 ~ 40791471 (+)
G67182 NA non-coding upstream 349591 40573554 ~ 40574856 (+)
G67180 NA non-coding upstream 352725 40570327 ~ 40571722 (+)
G67048 NA non-coding upstream 1175086 39749157 ~ 39749361 (+)
G67027 NA non-coding upstream 1618860 39305297 ~ 39305587 (+)
G67221 ppp3ccb,LOC107678020,LOC107553709,LOC107720725,LOC107586120,LOC107705087,LOC103046193 non-coding downstream 10533 40950099 ~ 40965912 (+)
G67272 NA non-coding downstream 99288 41038854 ~ 41039096 (+)
G67309 LOC105030512,LOC106569888 non-coding downstream 364621 41304187 ~ 41305221 (+)
G67310 NA non-coding downstream 392700 41332266 ~ 41397674 (+)
G67322 NA non-coding downstream 568041 41507607 ~ 41508101 (+)
AMCG00020993 atad1,atad1a,LOC105014378,LOC108414574,LOC106580455,LOC103365845,LOC107087860,LOC102796919,LOC101479261,LOC100705680,LOC106527948,LOC105919473 other upstream 354232 40555966 ~ 40570215 (+)
G67108 LOC100846954 other upstream 602626 40321113 ~ 40321821 (+)
AMCG00020954 NA other upstream 2787374 38117062 ~ 38137073 (+)
AMCG00020942 NA other upstream 3348591 37567036 ~ 37575856 (+)
G66551 NA other upstream 4007011 36914815 ~ 36917436 (+)
AMCG00021005 LOC106580519 other downstream 111906 41051472 ~ 41062527 (+)
G67323 NA other downstream 658657 41598223 ~ 41602113 (+)
G67459 NA other downstream 1113364 42052930 ~ 42053675 (+)
AMCG00021029 sfrp1,LOC104937559,LOC106585130,LOC105889956 other downstream 1483777 42423343 ~ 42465886 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031106 ppp3cca coding NC_007116.7 CM002889.2 27924347 ~ 27994679 (-)
grasscarp (Ctenopharyngodon idella) CI01000339_04388819_04415624 PPP3CCA, PPP3CCB, PPP3CC, PP2BC coding CI01000339 null 4388392 ~ 4415624 (-)