AMCG00021002


Basic Information

Item Value
gene id AMCG00021002
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 40910435 ~ 40913147 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021002
CCGTCCCCTTTCCCCCAACGGTGCGCCTCACCATGAAGGAGCTGTTTGAAGATGGGAAGCCCAAGGTGGAGGTGCTGAAGAGCCACCTGGTCAAGGAAGGCCgtctggaggaggaggtggCTCTCAAGATCATCAACGATGGGGCAGCCATTCTGCGCCAGGAAAAGACCATGATCGAGAGCAGTGtttcctattttgtatttgataaGCACAGTGCCTGCCACTTCTGttcacaaatcattttaaagagtcttcctgtcacttttttttttctgctggttTCAGTTTGTGGAGACGTCCATGGTCAGTTCTTTGATCTGATGAAGCTCTTTGAAGTTGGGGGCTCGCCCAACAACACACGCTATCTTTTCCTGGGAGACTATGTGGATCGAGGCTACTTCAGTATT

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021002 True 407 mRNA 0.50 2 40910435 40913147

Neighbor

gene id symbol gene type direction distance location
AMCG00021000 NA coding upstream 71662 40822569 ~ 40838773 (+)
AMCG00020999 NA coding upstream 111327 40758497 ~ 40799108 (+)
AMCG00020996 NA coding upstream 355779 40544090 ~ 40554656 (+)
AMCG00020995 NA coding upstream 380381 40490686 ~ 40530054 (+)
AMCG00020994 NA coding upstream 453663 40437338 ~ 40456772 (+)
AMCG00021001 NA coding downstream 11300 40924447 ~ 40939566 (+)
AMCG00021007 NA coding downstream 178086 41091233 ~ 41115596 (+)
AMCG00021010 NA coding downstream 298284 41211431 ~ 41212049 (+)
AMCG00021011 tcf7l1,LOC106585616 coding downstream 371787 41284934 ~ 41299165 (+)
AMCG00021014 ube2d4,UBE2D4,LOC108265473,LOC103381447,LOC107717106 coding downstream 455480 41368627 ~ 41370418 (+)
G67207 NA non-coding upstream 118964 40785761 ~ 40791471 (+)
G67182 NA non-coding upstream 335579 40573554 ~ 40574856 (+)
G67180 NA non-coding upstream 338713 40570327 ~ 40571722 (+)
G67048 NA non-coding upstream 1161074 39749157 ~ 39749361 (+)
G67027 NA non-coding upstream 1604848 39305297 ~ 39305587 (+)
G67221 ppp3ccb,LOC107678020,LOC107553709,LOC107720725,LOC107586120,LOC107705087,LOC103046193 non-coding downstream 36952 40950099 ~ 40965912 (+)
G67272 NA non-coding downstream 125707 41038854 ~ 41039096 (+)
G67309 LOC105030512,LOC106569888 non-coding downstream 391040 41304187 ~ 41305221 (+)
G67310 NA non-coding downstream 419119 41332266 ~ 41397674 (+)
G67322 NA non-coding downstream 594460 41507607 ~ 41508101 (+)
AMCG00020993 atad1,atad1a,LOC105014378,LOC108414574,LOC106580455,LOC103365845,LOC107087860,LOC102796919,LOC101479261,LOC100705680,LOC106527948,LOC105919473 other upstream 340220 40555966 ~ 40570215 (+)
G67108 LOC100846954 other upstream 588614 40321113 ~ 40321821 (+)
AMCG00020954 NA other upstream 2773362 38117062 ~ 38137073 (+)
AMCG00020942 NA other upstream 3334579 37567036 ~ 37575856 (+)
G66551 NA other upstream 3992999 36914815 ~ 36917436 (+)
AMCG00021005 LOC106580519 other downstream 138325 41051472 ~ 41062527 (+)
G67323 NA other downstream 685076 41598223 ~ 41602113 (+)
G67459 NA other downstream 1139783 42052930 ~ 42053675 (+)
AMCG00021029 sfrp1,LOC104937559,LOC106585130,LOC105889956 other downstream 1510196 42423343 ~ 42465886 (+)

Expression


Co-expression Network