AMCG00021005 (LOC106580519)


Basic Information

Item Value
gene id AMCG00021005
gene name LOC106580519
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 41051472 ~ 41062527 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021005
atgtCTTTCGAGACTTCTCACTCGCGCCGAGTGTGCCCGGTCGTCACCGGGAACAAATTCGACACAGCCCACCGCAAAAAAGCAGTGGCTAACATCTTCGAAAATGTCAAACAGGACGCAATGCTGAAACTCTTCAAGAAATCTGGTGACATGAAGGCGGAGGAGAGAGCGAAGAGCATCTTCTCATTTGCCCAAGACCCAGAGGAAACGGCCAAAGCCTTGATGGCACTGAAACAGAGGAAAAAAGATAAATTTCTGCAGATCGTGGGTTTGGCTAGGGCCCCGTTCCTCGTACCTGGGGTCCGTTCATTGTACATGGATAAGTAG
>TU84041
TGCTCAGCTCAGCATTGGAGTAGGACAGGCTGGACATCTTGACCAATCTACGAAGAcataaaacagatacaaaatgtCTTTCGAGACTTCTCACTCGCGCCGAGTGTGCCCGGTCGTCACCGGGAACAAATTCGACACAGCCCACCGCAAAAAAGCAGTGGCTAACATCTTCGAAAATGTCAAACAGGACGCAATGCTGAAACTCTTCAAGAAATCTGGTGACATGAAGGCGGAGGAGAGAGCGAAGAGCATCTTCTCATTTGCCCAAGACCCAGAGGAAACGGCCAAAGCCTTGATGGCACTGAAACAGAGGAAAAAAGATAAATTTCTGCAGATCGTGGGTTTGGCTAGGTATTCCCTGAAACTGCACTGACACTTTTGCTCTGCTCCGCCGGAGCATACtatgaaaataaactcactGTAAGTGTAAGCTTTGACTTGCAGTACCGAGCGAATGGAATCCAAATACGTCTGCTGGAACAAGATAGCGGCTCTACCTGGCAAAGAACGAGTAGAGGAGATCAGTCTGAACCAGCAAGAACTGTTCAAGTACTGCACTAACACTGCCACGAAAgcacaagaaatacatttcctaCGTCTCTTGTGAGCCCGGGGAagagacaacaaaacaaaggatGGAGAAGTGCCTGTGGACTTTCAATACGGGTCCCATTTGGAAGCTAAACAAAATCGAGACTATTCTTTACAGACACAGTTAATCGTATGATTAATTGGTGTCActgtatgcatttgttaaaatgCCCATACATTATTGCACCTTATAGGTGTATGACGTTTTTGCAGGTGTGcacagatgttttctttttttactcgAGACCTATGCTATGGCATACAGaaaacattgttgttttaaCGCAAATGCCTGTTTAACGTCTGTGCCTTGTCTCTGTGTCAATTAAGGTCTGTAATACCTGTTTACACTGTGTTGATCAGTGACCCTAAATGACATTGCCACAGAAATATGTAATGATAACTATCATAAGTGTCTGACAGCCGCTGGGCGCAGTCatgttgtaatttgttaaataaattattcttcTATTGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021005 False 327 mRNA 0.50 2 41051545 41062527
TU84041 True 1067 TUCP 0.43 2 41051472 41052558

Neighbor

gene id symbol gene type direction distance location
AMCG00021001 NA coding upstream 111906 40924447 ~ 40939566 (+)
AMCG00021002 NA coding upstream 138325 40910435 ~ 40913147 (+)
AMCG00021000 NA coding upstream 212699 40822569 ~ 40838773 (+)
AMCG00020999 NA coding upstream 252364 40758497 ~ 40799108 (+)
AMCG00020996 NA coding upstream 496816 40544090 ~ 40554656 (+)
AMCG00021007 NA coding downstream 28706 41091233 ~ 41115596 (+)
AMCG00021010 NA coding downstream 148904 41211431 ~ 41212049 (+)
AMCG00021011 tcf7l1,LOC106585616 coding downstream 222407 41284934 ~ 41299165 (+)
AMCG00021014 ube2d4,UBE2D4,LOC108265473,LOC103381447,LOC107717106 coding downstream 306100 41368627 ~ 41370418 (+)
AMCG00021016 NA coding downstream 396950 41459477 ~ 41518845 (+)
G67272 NA non-coding upstream 12376 41038854 ~ 41039096 (+)
G67221 ppp3ccb,LOC107678020,LOC107553709,LOC107720725,LOC107586120,LOC107705087,LOC103046193 non-coding upstream 85560 40950099 ~ 40965912 (+)
G67207 NA non-coding upstream 260001 40785761 ~ 40791471 (+)
G67182 NA non-coding upstream 476616 40573554 ~ 40574856 (+)
G67180 NA non-coding upstream 479750 40570327 ~ 40571722 (+)
G67309 LOC105030512,LOC106569888 non-coding downstream 241660 41304187 ~ 41305221 (+)
G67310 NA non-coding downstream 269739 41332266 ~ 41397674 (+)
G67322 NA non-coding downstream 445080 41507607 ~ 41508101 (+)
G67371 NA non-coding downstream 556768 41619295 ~ 41619609 (+)
G67393 NA non-coding downstream 674720 41737247 ~ 41854669 (+)
AMCG00020993 atad1,atad1a,LOC105014378,LOC108414574,LOC106580455,LOC103365845,LOC107087860,LOC102796919,LOC101479261,LOC100705680,LOC106527948,LOC105919473 other upstream 481257 40555966 ~ 40570215 (+)
G67108 LOC100846954 other upstream 729651 40321113 ~ 40321821 (+)
AMCG00020954 NA other upstream 2914399 38117062 ~ 38137073 (+)
AMCG00020942 NA other upstream 3475616 37567036 ~ 37575856 (+)
G66551 NA other upstream 4134036 36914815 ~ 36917436 (+)
G67323 NA other downstream 535696 41598223 ~ 41602113 (+)
G67459 NA other downstream 990403 42052930 ~ 42053675 (+)
AMCG00021029 sfrp1,LOC104937559,LOC106585130,LOC105889956 other downstream 1360816 42423343 ~ 42465886 (+)

Expression


Co-expression Network