AMCG00021012


Basic Information

Item Value
gene id AMCG00021012
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 41596080 ~ 41602270 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021012
TGTGACGTCTTTTCCGGTTGAGTTCATGCAAACGGGTAACCTAGACAGTTTCGTCGCAGAGTATGCGAAAAAGTATGCGCAGACTCGGCAAAGTATGCGGCTGCGTTCACGACTGCACAGACTGTGACGTCACACGCAGACTCCCGTATGCAATCTAGCCGGCAGAGAAGTGTCGTGAACGCGGCCATTCCCTTCACACCTGACTGGACTGCTGTGACATCATATAACTGCGACATCCGGCAGAGGCGCACTTTGTTAGTCTCTTTCGCTTGTCTTGTTTCAGAGCTTGTAGGAGAAGAGATGGCTGCAAGGTTACTTATGAGATCGGCCGTTCGTGCCGCGAGTAGCTGCCGGGCAGCGCCGGTACTAGCCCTCACCCGTGGCATGTCGGCGGGAGgcATCCCAACTGACGAAGAACAAGCCACGGGTTTGGAGAAGAAAATCATGAACGCGATGAAAGCGGGCACGGTCAGTTCTATAAGTGAGGAAGACAACACCACTATAGTGTGGTTCTGGTTGCACCAGGGGGAGGCACAGCGTTGCCCATCCTGTGGTGCACATTACAAGCTGGTCCCTCACGAGCTGCCCCACTGAGCTCCgtgctacaaaaacaaaattcctttaaaacattataacctcaTTTATGTTTacttgcaattaaaaaatgaaacaaaactaaGGGTCATGATCTTTATGGTTTGGGACACAAGACTTCTATAATTCCAATGTGACAGTTTACTATGgtttaatgtactgtatgttaCATTTGGTCTTCATCCTCTTAATAAAGTCAATGGCGTTGTATAAAGTTACTTGTAATGGTcaagatgtttgttttctgtttgtgaacTCGCATACTAAATTTGACTTAAATGCTGAACACAGCCAATTGTTagatcaaaaatattttttggtaTGAAGGTATAACACTCATCTCTCTCAATTATGTTTATAGACTTAATTGGTACAACAAGAAGTAAGCACACCAATACTGTGAATGAGGTGCCAGTCAACGAAAACAATTAGGACAAGAGGGAAAACGCACAATCGGGAGTTCAAACccaaaaataactatatattacttaaataaatacgTTATTTTTGGGTTTGAACTCCCGATTGTGCGTTTTCCCTCTTGTCCCAAAGACTTCCATGAACCTACTATGTAGTTTAAAAAGCTGCTTGGTTTATACAATTTTGACTAAATATAATTTGGCAAATTTCTAGTGAGATACAATCTTGGTTGGGGAGGGCTACTGTGGCTTTAGGCATTCCATTTGTGTTCTAATTAAACTTATTATTTGGGCCATCAAAAGAGCCATGCCAACCTTTGGGACCAAgatactgcatttttaaattagatcCTCAAGTTAATCATATTCAGGGGAGAATCATTGATCTGATCTTAAACCTTTTAACCTAAATCAGGGCCTGTCGGAGAGTGATTAATCAGTCCTAAGtgcctgaaatatctgagaTTGACGTCAATGTGCTCTTACTTTTACTCTTAAGAGTAAAAGGtattcataaagattctttagaATGAAAAGTACTCCTAACTCGACCTTGAGAGGCCTCCTAACTATTTAGGAATTGGGAGACAACCGTAATGAGAAGATGAAGCAAATTGCTTCATGAGGgctactgattttatttattttaatacaatgatGGCTAAATAGTGTAATTCAGAAGTGTACATGAAAGAATGGAAGGGGGTTTATGTAAATGTGGAGGGTGGAAATGCCACATAATTTACTTTGGGtttgtcataaaaaaatatatatatattgggttAGTTTTGGGATagaatttgattgattttggGCTAGTAGTGCATTTGTACCCAGAGTTTAATTCTAAAATCAGCGCTTGTATCAAAATAATCTCTGCTTTCTATTTCTTTACGGTTTTCATGATGGCTTTGAATTCATATGCTTCTGTTTTAAGTTTACAGTTCAA
>TU84151
atacgTTATTTTTGGGTTTGAACTCCCGATTGTGCGTTTTCCCTCTTGTCCCAAAGACTTCCATGAACCTACTATGTAGTTTAAAAAGCTGCTTGGTTTATACAATTTTGACTAAATATAATTTGGCAAATTTCTAGTGAGATACAATCTTGGTTGGGGAGGGCTACTGTGGCTTTAGGCATTCCATTTGTGTTCTAATTAAACTTATTATTTGGGCCATCAAAAGAGCCATGCCAACCTTTGGGACCAAgatactgcatttttaaattagatcCTCAAGTTAATCATATTCAGGGGAGAATCATTGATCTGATCTTAAACCTTTTAACCTAAATCAGGGCCTGTCGGAGAGTGATTAATCAGTCCTAAGtgcctgaaatatctgagaTTGACGTCAATGTGCTCTTACTTTTACTCTTAAGAGTAAAAGGtattcataaagattctttagaATGAAAAGTACTCCTAACTCGACCTTGAGAGGCCTCCTAACTATTTAGGAATTGGGAGACAACCGTAATGAGAAGATGAAGCAAATTGCTTCATGAGGgctactgattttatttattttaatacaatgatGGCTAAATAGTGTAATTCAGAAGTGTACATGAAAGAATGGAAGGGGGTTTATGTAAATGTGGAGGGTGGAAATGCCACATAATTTACTTTGGGtttgtcataaaaaaatatatatatattgggttAGTTTTGGGATagaatttgattgattttggGCTAGTAGTGCATTTGTACCCAGAGTTTAATTCTAAAATCAGCGCTTGTATCAAAATAATCTCTGCTTTCTATTTCTTTACGGTTTTCATGATGGCTTTGAATTCATATGCTTCTGTTTTAAGTTTACAGTTCAAGAGTAAGTATCTCTTCCTATTTAAATTCTCATTTGTCAGATTTcacatttgtataaatacatcaatGGTCAAAATGTGATTGTCTGAAACCACTCTCCttattttaacattgcatttataATGACCAATTAAGACATAACTTTAGGGTATGACtatgtacaaataaacaatatgtacaAACTACTtaaatttagcatttatttagtgaccctgctaacacacaatgttgccaaaaTGTAGTGTTAGCTATCCCCAGTGTTAGCTGGGGATTGACTTTATGAATCCTCTGCAAGAACAACCCTGCCCCCTGTGGGCCAATGGAGACTTTTATCCAACTGGTCTTAATATTTAGAATGGATCTTTAtcaaaactgaataattaaGTTGAATTCCTCTGATGCAAGATGCTCAGGACTTTTAAATTTTAGTTTTGCTTGAATTAATTACTGATGCTGTACTCTTTgtaatacagtgccttgcgaaagtattcaccccccttggcattcttcctattttgttgcattacaacctgtaattgaaatggatatttatttggatttcatgtaatggaca
>TU84154
AACATATCTTTCTCACACAGCGCtcgtttgttgttttgaagccgcGCTGCAACAGCGCAGTACCTTTTGAGCAGCTGCGCGGCTGTGNNNNNNNNNNAGCCTGTGGATGCGTCGCATTGTGACGTCTTTTCCGGTTGAGTTCATGCAAACGGAGCTTGTAGGAGAAGAGATGGCTGCAAGGTTACTTATGAGATCGGCCGTTCGTGCCGCGAGTAGCTGCCGGGCAGCGCCGGTACTAGCCCTCACCCGTGGCATGTCGGCGGGAGgcATCCCAACTGACGAAGAACAAGCCACGGGTTTGGAGAAGAAAATCATGAACGCGATGAAAGCGGGCACGGACCCCTTTAGTGTGTTTAAACCAAAGCAATATG

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006812 cation transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021012 True 1962 mRNA 0.40 3 41596652 41602153
TU84151 False 1444 lncRNA 0.34 1 41596080 41597523
TU84154 False 371 TUCP 0.53 4 41600401 41602270

Neighbor

gene id symbol gene type direction distance location
AMCG00021008 NA coding downstream 228723 41366724 ~ 41367357 (-)
AMCG00021006 NA coding downstream 453386 41092869 ~ 41142694 (-)
AMCG00021003 NA coding downstream 591886 41000180 ~ 41004194 (-)
AMCG00021004 NA coding downstream 596422 40997807 ~ 40999658 (-)
AMCG00020998 LOC103141401,LOC108234925,LOC104934772,LOC106944545,LOC106529513 coding downstream 866454 40661926 ~ 40729626 (-)
AMCG00021026 LOC108425180,LOC103036397,LOC106567972,LOC105015192 coding upstream 71339 41673609 ~ 41687703 (-)
AMCG00021027 NA coding upstream 372589 41974859 ~ 41975161 (-)
AMCG00021028 NA coding upstream 398379 42000649 ~ 42117898 (-)
AMCG00021031 slc25a37,LOC107393770,LOC103371456,LOC106585578 coding upstream 634971 42237241 ~ 42238378 (-)
AMCG00021032 slc25a37,LOC107093885 coding upstream 643727 42245997 ~ 42269261 (-)
G67368 NA non-coding downstream 3351 41592521 ~ 41592729 (-)
G67360 NA non-coding downstream 25789 41550415 ~ 41570291 (-)
G67358 NA non-coding downstream 75583 41518717 ~ 41520497 (-)
G67352 NA non-coding downstream 87987 41507719 ~ 41508093 (-)
G67339 NA non-coding downstream 114941 41474305 ~ 41481139 (-)
G67440 NA non-coding upstream 288768 41891038 ~ 41893984 (-)
G67462 NA non-coding upstream 473053 42075323 ~ 42075754 (-)
G67480 NA non-coding upstream 547323 42149593 ~ 42149966 (-)
G67522 NA non-coding upstream 801551 42403821 ~ 42404270 (-)
G67534 NA non-coding upstream 881315 42483585 ~ 42484218 (-)
AMCG00020997 atad1a,LOC106580455,LOC105890049,LOC105014378,LOC107656802,LOC108414574 other downstream 955741 40557130 ~ 40640339 (-)
AMCG00020970 NA other downstream 2491213 39047704 ~ 39104867 (-)
AMCG00020943 NA other downstream 3963504 37631777 ~ 37632576 (-)
AMCG00020922 NA other downstream 4528275 37061595 ~ 37067805 (-)
AMCG00020923 whsc1l1,LOC107720716,LOC107687514,LOC107705078 other downstream 4550141 37020011 ~ 37045939 (-)

Expression


Co-expression Network