AMCG00021015 (npy8ar,LOC105911411)


Basic Information

Item Value
gene id AMCG00021015
gene name npy8ar,LOC105911411
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 41657670 ~ 41658791 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021015
ATGGAGGAGTCCCAGAAGCTGGTCTAtctgaacagcagcagcaaggcCTGGTGGAGCGACCTGTCGTGGGATGAGTCCAGACGGTGTAATAACTCAGTGGGTGGCATGACTTTCCTTATTGTAGCCTACAGCATGGTGATTGCCGTGGGGCTAATTGGAAACACCTGCTTGGTGTTCATCATCTCACGACAGAAGGAGATGAGGAATGTCACCAATATCCTTATTGCTAACCTCTCCTGCTCCGACATCCTCATGTGCATTGTGTGCCTGCCTGTGACAGTCATCTACACCCTGATGGACCGTTGGATCCTGGGAGAGGCTCTGTGTAAGGTCACACCATTTGTTCAGTGCATGTCAGTTACCGTCTCTATCTTCTCCTTGGTCCTAATTGCCTTGGAACGCTATCAACTCATCATCCATCCCACAGGCTGGAAGCCGGTAGTGGGGCATTCATATTTAGTGGTGGCCATCACCTGGATGGTGGCCTGCTTTATTTCTCTGCCATTCCTCTCCTTCAACATCCTTACTGACACCCCCTTCCAGAATCTCAGCCTGCCCTTTGACCCCTTTCCCGACCACTTCGCCTGCTTAGAGCACTGGCCCTCAGAGCACCACCGCCTGGCCTATACCACCTCCCTACTGCTCTTCCAGTATTGCATTCCACTCTTCCTGATCCTGCTCTGCTACCTATGCATTTTCCTTCGACTATGGCGGAGGAAGGATATAGTGGAACGAGCCAGGGATGCCCGGCATAGGCAGGACAGGGGAAGCCAGAGGGTCAACGCTATGCTGGCCGCCATCATGACTGCTTTTACCCTCTGCTGGCTGCCGCTCAATGTCTTCAACATGCTGTTTGACTGGAACCACCAGGCTATCCCCACCTGCCAACACGATGTCATCTTCTCTGCCTGCCACCTAACTGCCATGGTTTCCACCTGCGTCAACCCCATCATCTATGGCTTCCTCAACAGCAACTTCCAAAAGGAGTTGAAGGCCACCCTGTACCGCTGTCGCTGTGGGGGACCACCGGAGAGTTACGAGAGCTTCCCACTCTCCACCGTCAGCACAGAGGTTTCCAAAGTGTCCTCCCTCCGTAACGGCTCACTCAGTATTACAGCCTAA

Function

symbol description
npy8ar Enables neuropeptide binding activity. Predicted to act upstream of or within neuropeptide signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; heart; immune system; nervous system; and notochord.

NR:

description
neuropeptide Y receptor Y8a

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004983 neuropeptide Y receptor activity molecular_function
GO:0042923 neuropeptide binding molecular_function

KEGG:

id description
K04209 NPFR; neuropeptide F receptor

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021015 True 1122 mRNA 0.53 1 41657670 41658791

Neighbor

gene id symbol gene type direction distance location
AMCG00021013 NA coding upstream 26238 41630679 ~ 41631432 (+)
AMCG00021009 NA coding upstream 68651 41578384 ~ 41589019 (+)
AMCG00021016 NA coding upstream 138825 41459477 ~ 41518845 (+)
AMCG00021014 ube2d4,UBE2D4,LOC108265473,LOC103381447,LOC107717106 coding upstream 287252 41368627 ~ 41370418 (+)
AMCG00021011 tcf7l1,LOC106585616 coding upstream 358505 41284934 ~ 41299165 (+)
AMCG00021021 NA coding downstream 42074 41700865 ~ 41709287 (+)
AMCG00021020 NA coding downstream 50687 41709478 ~ 41710229 (+)
AMCG00021022 NA coding downstream 53130 41711921 ~ 41740137 (+)
AMCG00021018 gpat4,LOC102786815,LOC106585610 coding downstream 96714 41755505 ~ 41782847 (+)
AMCG00021017 LOC106585609 coding downstream 182240 41841031 ~ 41861878 (+)
G67371 NA non-coding upstream 38061 41619295 ~ 41619609 (+)
G67322 NA non-coding upstream 149569 41507607 ~ 41508101 (+)
G67310 NA non-coding upstream 259996 41332266 ~ 41397674 (+)
G67309 LOC105030512,LOC106569888 non-coding upstream 352449 41304187 ~ 41305221 (+)
G67272 NA non-coding upstream 618574 41038854 ~ 41039096 (+)
G67393 NA non-coding downstream 78456 41737247 ~ 41854669 (+)
G67398 NA non-coding downstream 231880 41890671 ~ 41893979 (+)
G67405 NA non-coding downstream 325820 41984611 ~ 41985031 (+)
G67479 NA non-coding downstream 490768 42149559 ~ 42149967 (+)
G67519 NA non-coding downstream 736934 42395725 ~ 42395996 (+)
G67323 NA other upstream 55557 41598223 ~ 41602113 (+)
AMCG00021005 LOC106580519 other upstream 595143 41051472 ~ 41062527 (+)
AMCG00020993 atad1,atad1a,LOC105014378,LOC108414574,LOC106580455,LOC103365845,LOC107087860,LOC102796919,LOC101479261,LOC100705680,LOC106527948,LOC105919473 other upstream 1087455 40555966 ~ 40570215 (+)
G67108 LOC100846954 other upstream 1335849 40321113 ~ 40321821 (+)
AMCG00020954 NA other upstream 3520597 38117062 ~ 38137073 (+)
G67459 NA other downstream 394139 42052930 ~ 42053675 (+)
AMCG00021029 sfrp1,LOC104937559,LOC106585130,LOC105889956 other downstream 764552 42423343 ~ 42465886 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000158_00852564_00863444 NPY8AR coding CI01000158 null 852102 ~ 864241 (+)