AMCG00021017 (LOC106585609)


Basic Information

Item Value
gene id AMCG00021017
gene name LOC106585609
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 41841031 ~ 41861878 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021017
gCTCTGGGAAGCATGTACTTCATCCACAAATCCCTGAAGAACATCTACCAGTATGATTTTAACTGTAAgaTGAAAGATTTTAAAGCCATCTCTGGACAGAACAAATGCATCGGCTGTTTGGATGGGGTGTCCAtggtggaaaaagaaaaattccCAAAGAATTTCTGGCCTGATTTCAAGTGGTCCAGGAAAGGATATATGAGGACACGCTGGATTATTCACAACCAGGGCTTTGACCTAGTGAATGTCCACTTATTCCATGATGCCTCCAACCTCATAGCCTGTAACTCCAGCCCTTCTGTCTATTCTGGCAACAGGGAGAAAGCTCTTAGATATGTCATCAATAGgGTATCAGATGGTAGCTATACTGCCCTCCCATTCTTCCTTTTTGGAGATTTCAACTTCAGACTGGACACACTCAGTCTTGTACAGACCTTGTCCAGATCTGCTGATGTCCAGACAGTGAAGAAAGACAGCAGCAATGAGGTGGAGAAGATAATCTGTGAAGAGAAGGACAATGACCATAAGGTTCTTCTGCATATTGAGACCAAGCTCTTTCAGTACTTGCACCAAGCAGTCTTCAGAGAAGACAATGGCAGAGCGcttTTAAAGTTTGATAAGGAGATGAATGCATTTCAGGATGTCATCACAGAAGAAGATATTCTCTTCCCCCCTAGCTACCCCTACAGTGAGGACTACACAAAGCCCACACAGTACATGAACACCAGATGCCCATCCTGGTGTGACAGGATTTTGATGTCTCACTCTGCCAGTGACATCATCCACAGA

Function

NR:

description
PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase-like

GO:

id name namespace
GO:0046856 phosphatidylinositol dephosphorylation biological_process

KEGG:

id description
K01106 INPP5A; inositol polyphosphate 5-phosphatase INPP5A

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021017 True 789 mRNA 0.44 9 41841031 41861878

Neighbor

gene id symbol gene type direction distance location
AMCG00021018 gpat4,LOC102786815,LOC106585610 coding upstream 58184 41755505 ~ 41782847 (+)
AMCG00021022 NA coding upstream 100894 41711921 ~ 41740137 (+)
AMCG00021020 NA coding upstream 130802 41709478 ~ 41710229 (+)
AMCG00021021 NA coding upstream 131744 41700865 ~ 41709287 (+)
AMCG00021015 npy8ar,LOC105911411 coding upstream 182240 41657670 ~ 41658791 (+)
AMCG00021019 NA coding downstream 32955 41894833 ~ 41934745 (+)
AMCG00021023 NA coding downstream 121505 41983383 ~ 42015154 (+)
AMCG00021025 NA coding downstream 200839 42062717 ~ 42091656 (+)
AMCG00021024 NA coding downstream 260939 42122817 ~ 42125001 (+)
AMCG00021034 NA coding downstream 763506 42625384 ~ 42919615 (+)
G67371 NA non-coding upstream 221422 41619295 ~ 41619609 (+)
G67322 NA non-coding upstream 332930 41507607 ~ 41508101 (+)
G67310 NA non-coding upstream 443357 41332266 ~ 41397674 (+)
G67309 LOC105030512,LOC106569888 non-coding upstream 535810 41304187 ~ 41305221 (+)
G67272 NA non-coding upstream 801935 41038854 ~ 41039096 (+)
G67398 NA non-coding downstream 28793 41890671 ~ 41893979 (+)
G67405 NA non-coding downstream 122733 41984611 ~ 41985031 (+)
G67479 NA non-coding downstream 287681 42149559 ~ 42149967 (+)
G67519 NA non-coding downstream 533847 42395725 ~ 42395996 (+)
G67521 NA non-coding downstream 541943 42403821 ~ 42404266 (+)
G67323 NA other upstream 238918 41598223 ~ 41602113 (+)
AMCG00021005 LOC106580519 other upstream 778504 41051472 ~ 41062527 (+)
AMCG00020993 atad1,atad1a,LOC105014378,LOC108414574,LOC106580455,LOC103365845,LOC107087860,LOC102796919,LOC101479261,LOC100705680,LOC106527948,LOC105919473 other upstream 1270816 40555966 ~ 40570215 (+)
G67108 LOC100846954 other upstream 1519210 40321113 ~ 40321821 (+)
AMCG00020954 NA other upstream 3703958 38117062 ~ 38137073 (+)
G67459 NA other downstream 191052 42052930 ~ 42053675 (+)
AMCG00021029 sfrp1,LOC104937559,LOC106585130,LOC105889956 other downstream 561465 42423343 ~ 42465886 (+)

Expression


Co-expression Network