AMCG00021019


Basic Information

Item Value
gene id AMCG00021019
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 41894833 ~ 41934745 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021019
TTCCGTGACTGGGCCCTGGTTACATTTATTACTTCTGTTCTTTTGTTGAATGACCTGACCTGGGTTGCGTCCGTCGCCGAAtcagaggtcccgatcccggccgcTCCCAatgccgaaccagaggtcccaaagaaagggaaaagaaaaaagaaaaaggtacctGATCCAGTCCTGGCCGCGTCCGCTGCCaaaccagaggtcccgaccTTGGCCGCGTCCGCTGCTGAACCAGAGATCCCGACCCCGGCCGCTCCCGCTGCCAAACCAGAGGTCccaaagaaagggaaaagaaaaaagaaaaaggtatcTGCTCCGGTCCCGGCTGCGTCCGCTGCCGAACCAGAGGTACCGACCTTGACCGCGTCCGCCGCCgagccagaggtcccgatcccggtcCCGAACctggccgccgccgccgccaaGCCAGAAGTCCCGATCCCGGTCCCGAacccggccgccgccgccgccgccgccgagccagaggtcccgatcctgGTCCCGAACCCGGGTGCCGCCGCCGAGCCAGAGGTCCCAGCGGTCGCTGCCGCCGCCGCCCAGCCCGAGTGCCCAGCGATGGATCACAATATCCCAGGATCTTTCCTGTTCAATAACAGCCTGAACCAGTTTTCATCGGACATTAAAGCGCCCATGTGCCAATATTCTGTGCAGAACTCTTTTTACAAGCTCAATTCAGGGCTCAACACACAGCTGCAGGCAGGCACCCCACATGGCATCAGTGACATCCTGAGCAGGCCGGTGGTAGGTCCCCCTAACACCACCCTGCTCTCTAGCTACTCTCATGTAGGGGGCTTTGGGACAGTCACTGCCCCAGGGGTCTACTATAACCGGGACTATGCACCTTCGCTGGGGGGTTTCTCCAAGCCTGGTGTGGAATGCCCAACCAAGGCCAGGAGTGGCAGCTGCTGGGGTGAGGCAGGCTACGAGTGGAGAGGTGGAAGGCAGCATTGCAGTAACAACAGTGGGCATCTGGGAGAGACAATGAGCAGGAAGAAACACACACGGCCCACCTTCAGTGGGCACCAAATCTTCGCCCTGGAGAAGACCTTTGAGCAGACCAAGTACCTAGCAGGGCCGGAGAGGGCAAGGCTGGCATATTCCCTGGGAATGACAGAGTCACAGGTCAAGCCTGCCGGGCCAGAGATGGGCACCTCTGAGAATGAGGTGGAGGATGAGGAATACAACAAGCCCCTAGACCCTGACTCTGATGACGAGAAGATCCACCTGCCTCAGTATTACCAGCCCTGGATGAAGATTGCCAGGCGGCTCAGTGAGCTCATTGACTGTCATGTGCTACGCACTGAAATCAGCAAGATGCCCCAGCTGGACACCTGCTAtctacacacatacagagaatTGAGACTGGCACACCTGGCACTCAGTGTGATGACAATGGGCTATGTGTGGCAGGAGGGAGAGACGGGTGCTGTGAAGGTGTTACCCCGAAATCTGGCTGTCCCATACTGGGAAGTGTCTCAGCGCCTGGGGCTCCCTCCTATCCTGACTCACGCAGATGGGGTGCTGGCCAACTGGAGGAAGACTGACCCTGAA

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021019 True 1569 mRNA 0.59 7 41894833 41934745

Neighbor

gene id symbol gene type direction distance location
AMCG00021017 LOC106585609 coding upstream 32955 41841031 ~ 41861878 (+)
AMCG00021018 gpat4,LOC102786815,LOC106585610 coding upstream 111986 41755505 ~ 41782847 (+)
AMCG00021022 NA coding upstream 154696 41711921 ~ 41740137 (+)
AMCG00021020 NA coding upstream 184604 41709478 ~ 41710229 (+)
AMCG00021021 NA coding upstream 185546 41700865 ~ 41709287 (+)
AMCG00021023 NA coding downstream 48638 41983383 ~ 42015154 (+)
AMCG00021025 NA coding downstream 127972 42062717 ~ 42091656 (+)
AMCG00021024 NA coding downstream 188072 42122817 ~ 42125001 (+)
AMCG00021034 NA coding downstream 690639 42625384 ~ 42919615 (+)
G67398 NA non-coding upstream 854 41890671 ~ 41893979 (+)
G67393 NA non-coding upstream 40164 41737247 ~ 41854669 (+)
G67371 NA non-coding upstream 275224 41619295 ~ 41619609 (+)
G67322 NA non-coding upstream 386732 41507607 ~ 41508101 (+)
G67310 NA non-coding upstream 497159 41332266 ~ 41397674 (+)
G67405 NA non-coding downstream 49866 41984611 ~ 41985031 (+)
G67479 NA non-coding downstream 214814 42149559 ~ 42149967 (+)
G67519 NA non-coding downstream 460980 42395725 ~ 42395996 (+)
G67521 NA non-coding downstream 469076 42403821 ~ 42404266 (+)
G67528 NA non-coding downstream 538913 42473658 ~ 42473885 (+)
G67323 NA other upstream 292720 41598223 ~ 41602113 (+)
AMCG00021005 LOC106580519 other upstream 832306 41051472 ~ 41062527 (+)
AMCG00020993 atad1,atad1a,LOC105014378,LOC108414574,LOC106580455,LOC103365845,LOC107087860,LOC102796919,LOC101479261,LOC100705680,LOC106527948,LOC105919473 other upstream 1324618 40555966 ~ 40570215 (+)
G67108 LOC100846954 other upstream 1573012 40321113 ~ 40321821 (+)
AMCG00020954 NA other upstream 3757760 38117062 ~ 38137073 (+)
G67459 NA other downstream 118185 42052930 ~ 42053675 (+)
AMCG00021029 sfrp1,LOC104937559,LOC106585130,LOC105889956 other downstream 488598 42423343 ~ 42465886 (+)

Expression


Co-expression Network