AMCG00021026 (LOC108425180,LOC103036397,LOC106567972,LOC105015192)


Basic Information

Item Value
gene id AMCG00021026
gene name LOC108425180,LOC103036397,LOC106567972,LOC105015192
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 41673609 ~ 41687703 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00021026
aattctacacttttgacaatataccctagcaatTTGCCTTCTTAATTGCTTtgccacattgtttggatgaggaGTCTTCGTGGACTCCTcggtctttctcatgctttattTCTTCtggttctattcctcccatagtgtaattatagcggacattttatattatcaacaagatttaattactttatgaTTTCAAAGTGAtttataaaacctgctggataggggctctccaaaAACCGAGGTTGGAGAGTGGAGACCCTGCCCTAGCCCTGCTTATAAACTTATAAAATAGATAGCAATGTTGAGGACataaagcacacaaaaatataaagttactTTTCAAAAGGACTTATTAGATTTACTTAAAACTTCAAAAATCATAATAAGTTAAATCTCGTGCAGAGGTAGTTGATGTGTTATATTATAGTTTGGGACTCCACAATAGTCTTATTACTTTCCAATTAGAGTGCTAGTTAATGATGTGCTTGGATTGTTTGCAGTTGTTGatcttgtctctctctctctctccccctccccctccccttgGTGCCTGTATGTTTGTGACCGTCGGACACTCTCTTttctatgtgtgtctgtgtgtgcatttggtgcatgtttgtctttgtctgtgtgcatgCTGGGCTGTGGGAAGGCACTGCTGGGTGTGCTTTGCAACAGAGCGTGAGGACCGGGTGCTGGAGTGGGTGAGTCCATGCCGCTGTAAGGGCTGCACCAAGTGGATCCACCAGGCTTGCCTTCAGCGCTGGCTGGATGAGAAGCAAAAAGGCAATGGCGCTGGGGGGGTGAGCTGCCCGCAATGTGGCACACAGTACAGGATTGTCTTCCCCAAATTAGGGCCCCTGGTGTACTTCCTGCAGCAGGTAGACCGACTCTTGTCAAGGATTAGCCCTTTTGCTGCAGCTGGAGTTGTAGTGGGCACTGTGTACTGGTCTGCTGTCACCTATGGAGCAGTCACTGTCATGCAGGTGGTAGGACACAAGAAGGGCCTGGATGTGATGGAGCGCGCTGACCCCTTGTTCCTGCTCATGGGCCTGCCCACCATCCCTGTCATGCTGGTTTTGGGAAAGATGATCCGCTGGGAGGACTATGTGCTTCGGATTGGACGCCCGGTGCCCCGTGTGCCCATTGACTCAGGCTTTGGAAGTGATCACCTCTCAGTGTCACGCACCCTATGTGGTGCCCTCGTCTTCCCCAGCATTGCCAGCCTAGCTGGCAGACTAATGTTCCGCAGGGTGCCATCCAGTCTGCAGAGAACCATCCTGGGGGGGATTGCCTTCATTGTCATCAAAGGAATTCTGAAAGTCTACTTCAAGCAGCAGCAGTACCTCATCCAAGCCAACCGGCGAATCCTTAACTACCCAGAGCGAGAAGAGGTGGCTGAAGGACGTGGGGAGGAGGACAATGAGGATAGCGGGAATGAGTAGAGAGAACTGCCCCAACCCTTCAACCCCCCCAAATATCCTGCACATCTTTCTCCTTTTACTACCAGACTGACACCAGCTGATTGTCATGCAGTCTGTCATGTAGACAGTGTGTCCTATAGaataacagtatttattaaaagttttgattgtttgtttgtttttttcactttttttaattctaccCTGCATCAAACCGCAAAATAAGAAATGAGggatatatacaatttaaatttgtcTGCTTAAGGTGTTCCAGAATTGAAAATCAGGTTGCAAAATGTTACATACATTTCTCAATAACATCCTCAAGTTCAACAGggtgtgtatacattttcttctttaaattgactacatttattacattagccatgcttttaaaattgttataaaCTATAGACAGTAGAGTGCATATCCTTCCTCAGATGCTGAAATATTCACTAATGAAATAttgatatttgtgtgtgtgtgcgagagattATATAAATttgtataca

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase MARCH5

GO:

id name namespace
GO:0090344 negative regulation of cell aging biological_process
GO:0051865 protein autoubiquitination biological_process
GO:0090140 regulation of mitochondrial fission biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10660 MARCH5; E3 ubiquitin-protein ligase MARCH5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00021026 True 1933 mRNA 0.45 5 41673609 41687703

Neighbor

gene id symbol gene type direction distance location
AMCG00021008 NA coding downstream 306252 41366724 ~ 41367357 (-)
AMCG00021006 NA coding downstream 530915 41092869 ~ 41142694 (-)
AMCG00021003 NA coding downstream 669415 41000180 ~ 41004194 (-)
AMCG00021004 NA coding downstream 673951 40997807 ~ 40999658 (-)
AMCG00020998 LOC103141401,LOC108234925,LOC104934772,LOC106944545,LOC106529513 coding downstream 943983 40661926 ~ 40729626 (-)
AMCG00021027 NA coding upstream 287156 41974859 ~ 41975161 (-)
AMCG00021028 NA coding upstream 312946 42000649 ~ 42117898 (-)
AMCG00021031 slc25a37,LOC107393770,LOC103371456,LOC106585578 coding upstream 549538 42237241 ~ 42238378 (-)
AMCG00021032 slc25a37,LOC107093885 coding upstream 558294 42245997 ~ 42269261 (-)
AMCG00021030 NA coding upstream 615223 42302926 ~ 42315442 (-)
G67368 NA non-coding downstream 80880 41592521 ~ 41592729 (-)
G67360 NA non-coding downstream 103318 41550415 ~ 41570291 (-)
G67358 NA non-coding downstream 153112 41518717 ~ 41520497 (-)
G67352 NA non-coding downstream 165516 41507719 ~ 41508093 (-)
G67339 NA non-coding downstream 192470 41474305 ~ 41481139 (-)
G67440 NA non-coding upstream 203335 41891038 ~ 41893984 (-)
G67462 NA non-coding upstream 387620 42075323 ~ 42075754 (-)
G67480 NA non-coding upstream 461890 42149593 ~ 42149966 (-)
G67522 NA non-coding upstream 716118 42403821 ~ 42404270 (-)
G67534 NA non-coding upstream 795882 42483585 ~ 42484218 (-)
AMCG00021012 NA other downstream 71339 41596080 ~ 41602270 (-)
AMCG00020997 atad1a,LOC106580455,LOC105890049,LOC105014378,LOC107656802,LOC108414574 other downstream 1033270 40557130 ~ 40640339 (-)
AMCG00020970 NA other downstream 2568742 39047704 ~ 39104867 (-)
AMCG00020943 NA other downstream 4041033 37631777 ~ 37632576 (-)
AMCG00020922 NA other downstream 4605804 37061595 ~ 37067805 (-)

Expression


Co-expression Network