G59381


Basic Information

Item Value
gene id G59381
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 1185283 ~ 1186234 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU74257
TGGCCACATGCCGGATCTGCTTGTAAGGCATTGTTCTGGTCTGGCCTTTGTGCCGCCCTGTTACCAATTAACATATCAAAACCAACCAATAAAATGACACtgcatcaaatttcaaatagaaaCCAAGATGGAGAcgatctctctcctctctacTCTAAACTTTTATTAGAACCTTTTGGTctctcaaaaaaacatttttaagcatCTAGACCTATAGTCAACAACCACTAAGAATATTTCAGGCCTTTATAAGCGCTAAAAAACAACCTGAGCcaagaaaataactataaagaTCTAAAATAACTAGCGCttttacagtgattttttttttattttttaatagtgaTGCTTTATTTGGTATTAAACAAGTCACAAACTACTCAGAACAGCATTTATCCCCGCAAAAGAgatatttgggtttattttacaaagcttataaattatataggttaaaagtattctgaatgttttgataCCACACGCCATACCTACTGTTGTCTGAgcccacccccgccccccatgGTGTGAGTGATTTAGCCTTGAGTGTTGTGATCTATTTAGCATTGAGtgatcagttgtttttattttttaaacgatTCCTTATCATCAGGGATTGAGACCGCTAAAATACCTTAAAAGCATATCCTTATCTTAAGTCTAACTCTTATGAGCTTTAAGACCctagaatgtatttaagtaaaacgAATGAACATATTATGTGAGAGataaaatataaccacagctttttttattttttttattttttacaaaaacaattaacctatacacacaaacacccacacacacacactcttttttaattttatttttaattagatttgaGGGGAGAGACAGAGCCAGATACAGTGTGGATAACATAAGTACCCTATGCAAAACAGGCATTGTTAGGACCTGGGATCATAACAGACAACAGAACTTGTTGATCTTATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74257 True 952 lncRNA 0.34 1 1185283 1186234

Neighbor

gene id symbol gene type direction distance location
AMCG00019885 NA coding upstream 56593 1124534 ~ 1128690 (+)
AMCG00019879 trim32,LOC107728008,LOC107564424 coding upstream 609588 573758 ~ 575695 (+)
AMCG00019877 NA coding upstream 767178 385026 ~ 418105 (+)
AMCG00019876 NA coding upstream 887971 281341 ~ 297312 (+)
AMCG00019874 NA coding upstream 914630 240359 ~ 270653 (+)
AMCG00019886 LOC107374630,LOC108230875,LOC104924185,LOC105913012,LOC101063574 coding downstream 398789 1585023 ~ 1585622 (+)
AMCG00019894 NA coding downstream 1088145 2274379 ~ 2327335 (+)
AMCG00019893 lhx3 coding downstream 1154554 2340788 ~ 2351023 (+)
AMCG00019898 cunh9orf69,c5h9orf69,lg14h9orf69,LOC106563262,LOC106565885 coding downstream 1228630 2414864 ~ 2416601 (+)
AMCG00019896 NA coding downstream 1257017 2443251 ~ 2454771 (+)
G59351 NA non-coding upstream 182391 932301 ~ 1002892 (+)
G59306 NA non-coding upstream 738425 445632 ~ 446858 (+)
G59304 NA non-coding upstream 917320 267748 ~ 267963 (+)
G59299 NA non-coding upstream 939066 245912 ~ 246217 (+)
G59289 NA non-coding upstream 964908 219605 ~ 220375 (+)
G59385 NA non-coding downstream 42712 1228946 ~ 1229205 (+)
G59387 NA non-coding downstream 78258 1264492 ~ 1264739 (+)
G59402 NA non-coding downstream 307451 1493685 ~ 1493889 (+)
G59411 NA non-coding downstream 422783 1609017 ~ 1609373 (+)
G59425 NA non-coding downstream 610692 1796926 ~ 1797141 (+)
AMCG00019884 NA other upstream 76287 1074816 ~ 1108996 (+)
G59305 NA other upstream 739753 441598 ~ 445530 (+)
AMCG00019920 NA other downstream 1776274 2962508 ~ 2969595 (+)
AMCG00019934 NA other downstream 2055074 3241308 ~ 3251407 (+)
AMCG00019967 prrc2b other downstream 3637579 4823813 ~ 4856929 (+)
G60137 NA other downstream 4169538 5355772 ~ 5361863 (+)
G60132 NA other downstream 4172230 5358464 ~ 5359365 (+)

Expression


Co-expression Network