G59460


Basic Information

Item Value
gene id G59460
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2164521 ~ 2167440 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU74341
CTATTGCAAACCTCAGCTTGTGCAACACAGGGTCACTGGGTTCTGGGTTTGACTTCTCTGCTAGAACCATAGCACTGGTTACCAATAAAATATGTgtcttagagagagagagagagagagagagagaggctcctACAGAGCCTTGAATAGCCTTGAGATCATTCTTGAGTTCTCCATACCTTCTTCTCAAACTCCTCTCCCTGTTTGACCTCGCGAGGGTAGCCGTCAATCAGGAAACCCTTCGACACGTCAGCCTTGGCGATCATGGCATCTTTCAGCATGTCCAGAACGGTGTCCTGGGGGCACGAGTTCTCCCTTCTCCATGATGGCAGACAGCTTCTTGCCTCTCTCCGACCCTGAGCCGACCTCTGCCCTGAGGAGGTCCCCGGTGGACAGGTGGGTGTAGCCATACTTGGCCACGATCTTCTCGCACTGGGTGCCCTTGCCGGAGCCGGGTCCGCCTGGGGGAAAGAGGAGGAAGACGTTCCTGGATCTCTCCCGGGCCTCAGACAAACCATACAATTTAAATTCCTTATATAACTTCTGTTCACGTGGTACTTAACTGTACAGATTGCATTGTTAGATGTATGTTTGGCACTTCTAGTATTTAGCACTGAAGCAAGTGTGAAGTCTTACGTAGGATTTAAacgaatttatttatttacgtctCCTTTCCATTCAACAGACAATACCTCTTGCTGTAGCAGGTAGACAAATACTTTGTGAGGAAAGGACTAGCCCTGCATTGCTCATGTTTGATGTGTTTGTCCCCTATTATGCCACATATTCCTCGTGAGAAATCTTTGGATGGgctacttctctctctcctttaacTGTCAAGAAAGCGTCACCAGTCTTGTTATCGAATCCTCATTAAGAgaagacacagacacatcaTTGAATATGATTAAagtagaataaaacacaacagatcCAGTTAACGGAAAACGCAAACATGAGTTAAATTACAGTTTAGTTTGAGTAACTCAGAGCTCAGCAGGAACACATCCTAACAGAGCACAACAAACAGACTCGGGCAGTGCTGTACAAACGTGGGTGGGCCTGACTTGATTTCCTGAACTCGGAAATGAAAACAGATGCACTTTGTTGTTGATGCCGTTTACCACAGGGACAAAACGAAGACGGAGTAAATTAAcaaccagaaaaataaatgtttcagacTCACCCACGACGAAGATGATCTTGCTACCTTTCAGTTTATCTGAAAGAGATACGGAAAATGTTGAGATACCCaggataacatttattttttaacctccCTGGAACAATTAGAGTAGAGTCCCCTGAGCTTCCTAGCGAAGACGCCGGGTCATCAGGGTCCACGAGACGGTACCTGGTGGACCGCTAGGCCTGACTTCAACGGCCTTATCTGACGAACAACTATTTCCCATCGAGGCTGCAGATGTCTCCCCCTCTTCTCAGGCTCCTTGCTTTCCCTCCGACCAAAAGTTTTCCTCTGAAAGACtggctgttttttctttccttttctttcccttcttccGCTGGCCAGTGAAACATTCAAAGTGTCACCAGGCAACAGTTGCTAGCATAGCTGCCCAGCCCCAAACCACTTCAAAGCAACTATTTCTGGCAGACGCTCTAGTTTGGGAGTAATGTTtagacaaatgtgtttattcttttttgAAACGGTTAATCTAAGagtatttcccttttcaataagcgtaatgttattttatgaataCGCTTTACTGAACTTGACACCGATTggagcatttttaaaacataacagtCCATCGCAGCCCAGTGCTCGTCTCAAACGGCAGAAACAAGTCAAAACCATGCCTAACCAATAACCAAGAAGCTACCAGAATGGAAGGTTTACAGATTTGCTGTCTTACTTAGTGTGACTGTACTTCTAGAGGGGTTACAATAATACCATAGTGAGATAAAGGAGTGCTGCTCCTTAAcgaaatatgttatttttactCATTCTTAAATCATACCACCATCTCACTGTAGAAAGACCCTATAAAACCCTGCCCCAGTGTCTCATGAAACTTTATCCTGGAGCTTCGAGGAGGTAATTATAAGTTGTTCCAGAAAATTCCTTGGGAGGCACGTTAAATCTATTAATACCCCCCTTGACTGCTCCACTCGTGGCTCTCTATGCTTCAGAAGTTGCCTAATTATAGACCAGGCTGTTAAATTGGTACTGAGAACGTGCGGCCTCTCCTGCTCAGTTTGTGACAGGGTGTCTGCACAGCACCGACGAGCCCAAGGTCTTCAGTGCACCAGCCCTGGGTTGAGAAACGATGGAGTGCACGTTCTGCTCTTCAAGCCTCGTTCCTCCTTCAGCCGCACTAACGATCGTACGGGAGTGTTAATTAAACATCACACTGCTTCGATGGAGGGTGGGTGGAAAGGTCGTTTTGTCGGCTACAGAAAAAGCGATCTGCGGACCGGTACAAAAGGCTGCATTGTTTTCCAGGGCGAGGCTGGCCTTACCAAGCGCACTCTCCATGGCGTTTCATTTAGCCACCGTACTATAAACCCATTCCCCCGAGTTGAGCCCAGTCGAGTCACAGACTCACGGACACATCGAAACAAAGGCCGGTGCTGTGGAGATAAAGGAGAAACTCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74341 True 2623 lncRNA 0.46 2 2164521 2167440

Neighbor

gene id symbol gene type direction distance location
AMCG00019886 LOC107374630,LOC108230875,LOC104924185,LOC105913012,LOC101063574 coding upstream 578899 1585023 ~ 1585622 (+)
AMCG00019885 NA coding upstream 1035831 1124534 ~ 1128690 (+)
AMCG00019879 trim32,LOC107728008,LOC107564424 coding upstream 1588826 573758 ~ 575695 (+)
AMCG00019877 NA coding upstream 1746416 385026 ~ 418105 (+)
AMCG00019876 NA coding upstream 1867209 281341 ~ 297312 (+)
AMCG00019894 NA coding downstream 106939 2274379 ~ 2327335 (+)
AMCG00019893 lhx3 coding downstream 173348 2340788 ~ 2351023 (+)
AMCG00019898 cunh9orf69,c5h9orf69,lg14h9orf69,LOC106563262,LOC106565885 coding downstream 247424 2414864 ~ 2416601 (+)
AMCG00019896 NA coding downstream 275811 2443251 ~ 2454771 (+)
AMCG00019897 NA coding downstream 314465 2481905 ~ 2483959 (+)
G59459 NA non-coding upstream 917 2161935 ~ 2163604 (+)
G59440 NA non-coding upstream 129727 2034561 ~ 2034794 (+)
G59425 NA non-coding upstream 367380 1796926 ~ 1797141 (+)
G59411 NA non-coding upstream 555148 1609017 ~ 1609373 (+)
G59402 NA non-coding upstream 670632 1493685 ~ 1493889 (+)
G59467 NA non-coding downstream 13163 2180603 ~ 2181069 (+)
G59557 NA non-coding downstream 416254 2583694 ~ 2634130 (+)
G59578 NA non-coding downstream 548088 2715528 ~ 2716915 (+)
G59625 NA non-coding downstream 620470 2787910 ~ 2788239 (+)
G59638 NA non-coding downstream 658151 2825591 ~ 2826637 (+)
AMCG00019884 NA other upstream 1055525 1074816 ~ 1108996 (+)
G59305 NA other upstream 1718991 441598 ~ 445530 (+)
AMCG00019920 NA other downstream 795068 2962508 ~ 2969595 (+)
AMCG00019934 NA other downstream 1073868 3241308 ~ 3251407 (+)
AMCG00019967 prrc2b other downstream 2656373 4823813 ~ 4856929 (+)
G60137 NA other downstream 3188332 5355772 ~ 5361863 (+)
G60132 NA other downstream 3191024 5358464 ~ 5359365 (+)

Expression


Co-expression Network