G59485


Basic Information

Item Value
gene id G59485
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 2195803 ~ 2221194 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU74366
ACACAATTTGtatatatacactcacctaaaggattattaggaacacctgttcaatttctcattaatgcaattatctaaccaaccaatcacatggcagttgcttcaatgcatttaggggtgtggtcctggtcaagacaatctcctgaactccaaactgaatgtctgaatgggaaagaaaggtgatttaagcaattttgagcgtggcatggttgttggtaccagacgggccggtctgagtatttcacaatctgttcagttactgg
>TU74368
GTAAAACCCATCTGTTTGTGGACTTGCGTCTCGGCTCATTGCAGCTCTCTTTTCATTCAGATTTGGAGAGGCTCCCCTTGTGTTTCACTTCTGAAATGAGAGCAACTTTATCatgaagtttatttttacatttttctaaagTACTTCTCTTTGTCGTGTGGGAGAGTCACAGGCTCTTAACTCACACAGCTCCGGGACGGCAGGATTCACACAGGCATTGcgtttgattgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtatatatacactcacctaaaggattattaggaacacctgttcaatttctcattaatgcaattatctaaccaaccaatcacatggcagttgcttcaatgcatttaggggtgtggtcctggtcaagacaatctcctgaactccaaactgaatgtctgaatgggaaagaaaggtgatttaagcaattttgagcgtggcatggttgttggtaccagacgggccggtctgagtatttcacaatctgttcagttactgg

Function

GO:

id name namespace
GO:0046031 ADP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0016052 carbohydrate catabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74366 False 263 lncRNA 0.41 2 2195803 2205765
TU74368 True 521 lncRNA 0.43 2 2195803 2221194

Neighbor

gene id symbol gene type direction distance location
AMCG00019890 LOC107731024,LOC108423692,LOC107665022,LOC108255392,LOC107595531 coding downstream 10608 2160178 ~ 2185195 (-)
AMCG00019889 NA coding downstream 59864 2105830 ~ 2135939 (-)
AMCG00019888 brinp1,LOC107597955,LOC106563266 coding downstream 275048 1913441 ~ 1920755 (-)
AMCG00019887 brinp1 coding downstream 305934 1874560 ~ 1889869 (-)
AMCG00019883 NA coding downstream 1249914 944898 ~ 945889 (-)
AMCG00019892 gpsm1,LOC106563264 coding upstream 5610 2226804 ~ 2247160 (-)
AMCG00019899 NA coding upstream 242442 2463636 ~ 2479709 (-)
AMCG00019913 NA coding upstream 468708 2689902 ~ 2690317 (-)
AMCG00019914 NA coding upstream 484135 2705329 ~ 2705778 (-)
AMCG00019912 NA coding upstream 488768 2709962 ~ 2742168 (-)
G59484 NA non-coding downstream 3256 2192334 ~ 2192547 (-)
G59414 NA non-coding downstream 533624 1605102 ~ 1662179 (-)
G59403 NA non-coding downstream 701830 1493686 ~ 1493973 (-)
G59396 NA non-coding downstream 798578 1389345 ~ 1397225 (-)
G59395 NA non-coding downstream 848324 1347246 ~ 1347479 (-)
G59556 NA non-coding upstream 353610 2574804 ~ 2575670 (-)
G59810 NA non-coding upstream 1269524 3490718 ~ 3491049 (-)
G59825 ttll11,LOC107579646 non-coding upstream 1376011 3597205 ~ 3597760 (-)
G59827 NA non-coding upstream 1418844 3640038 ~ 3642114 (-)
G59826 NA non-coding upstream 1424845 3646039 ~ 3647334 (-)
G59408 LOC107374630,LOC108230875,LOC104924185,LOC105913012,LOC101063574 other downstream 609803 1584919 ~ 1586000 (-)
AMCG00019880 NA other downstream 1622976 535831 ~ 572827 (-)
G59505 NA other upstream 103094 2324288 ~ 2327415 (-)
G59530 NA other upstream 233717 2454911 ~ 2480799 (-)
G59545 NA other upstream 273705 2494899 ~ 2507020 (-)
G59712 NA other upstream 810662 3031856 ~ 3034335 (-)
G59720 NA other upstream 886607 3107801 ~ 3111347 (-)

Expression


Co-expression Network