G59825 (ttll11,LOC107579646)


Basic Information

Item Value
gene id G59825
gene name ttll11,LOC107579646
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3597205 ~ 3597760 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU74835
AGCACGTTGGTCCAGGTTTCCCTGGTGGGATGTCGGCCTGATAGTAGACCTTGAGCTCAGGCACCAAGGCTATAACAGTCTTAATGACCAGGGAGATGATGTCTGACCACACCTTTTTGATGTCTACGCCTTTGGAGGCCAGGCGGTACAGGATGCTGGAGAAGGTCCTCTTGCTGCCCGTGTTGGTGCTGTCTGAATGGACAAAGTTGTCACTGTGGACGTTTAAGGAGTAGTTGGTCAGGTGCATGAAGACGTGGTTCAAGTTCTTTTGGCTGGGCTCCTGGTAGGCCTCGGTGCAGAACCTGGAGAGCCCCTCTTTGGCGATGTAGATCTCCAGTGGCTCCAGGGACTTGACCAGGACATACAGGCGGATGTCGAACTTGAGCTTGTCAATGAGCAGAGGCTTCTGGATGTACTCCTGCACCACGGCGTTCTTGCACTGGGTGCTGCCCACTACCCGGATGTCACTGGGGTCACGAATGAGGTAGATGCCATCGCCCTGGGACCCTCCGTCAGGCTTCACAATGAACGTTGGTTTCCAGGAGGCATCCTTGTC

Function

symbol description
ttll11 Predicted to enable tubulin binding activity and tubulin-glutamic acid ligase activity. Predicted to be involved in microtubule cytoskeleton organization and protein polyglutamylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in cilium. Orthologous to human TTLL11 (tubulin tyrosine ligase like 11).

NR:

description
PREDICTED: tubulin polyglutamylase TTLL11 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74835 True 556 lncRNA 0.55 1 3597205 3597760

Neighbor

gene id symbol gene type direction distance location
AMCG00019946 NA coding downstream 67569 3523288 ~ 3529636 (-)
AMCG00019947 NA coding downstream 99459 3496276 ~ 3497746 (-)
AMCG00019944 NA coding downstream 217608 3340802 ~ 3379597 (-)
AMCG00019945 garnl3,LOC102797662 coding downstream 269454 3323779 ~ 3327751 (-)
AMCG00019938 prrx1 coding downstream 339368 3255212 ~ 3257837 (-)
AMCG00019950 NA coding upstream 77347 3675107 ~ 3706097 (-)
AMCG00019949 LOC107599025,LOC107725315 coding upstream 125135 3722895 ~ 3728526 (-)
AMCG00019952 phf19,LOC106580128,LOC106585785,LOC107557185 coding upstream 509237 4106997 ~ 4133823 (-)
AMCG00019953 NA coding upstream 545230 4142990 ~ 4164282 (-)
AMCG00019954 NA coding upstream 567039 4164799 ~ 4172609 (-)
G59810 NA non-coding downstream 106156 3490718 ~ 3491049 (-)
G59556 NA non-coding downstream 1021535 2574804 ~ 2575670 (-)
G59485 NA non-coding downstream 1376011 2195803 ~ 2221194 (-)
G59484 NA non-coding downstream 1404658 2192334 ~ 2192547 (-)
G59414 NA non-coding downstream 1935026 1605102 ~ 1662179 (-)
G59827 NA non-coding upstream 42278 3640038 ~ 3642114 (-)
G59826 NA non-coding upstream 48279 3646039 ~ 3647334 (-)
G59852 NA non-coding upstream 73263 3671023 ~ 3675014 (-)
G59853 NA non-coding upstream 183138 3780898 ~ 3796706 (-)
G59862 NA non-coding upstream 441755 4039515 ~ 4039918 (-)
G59806 NA other downstream 117096 3479782 ~ 3480109 (-)
AMCG00019942 NA other downstream 411240 3166237 ~ 3185965 (-)
G59720 NA other downstream 485858 3107801 ~ 3111347 (-)
G59712 NA other downstream 562870 3031856 ~ 3034335 (-)
G59545 NA other downstream 1090185 2494899 ~ 2507020 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 1414684 5012444 ~ 5061512 (-)
G60118 NA other upstream 1666154 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 1678902 5276662 ~ 5278291 (-)
AMCG00019992 NA other upstream 1693830 5291590 ~ 5292673 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other upstream 2561817 6159577 ~ 6172474 (-)

Expression


Co-expression Network