G59827


Basic Information

Item Value
gene id G59827
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3640038 ~ 3642114 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU74837
TTTACTGTAGTGTAATAGGATGCATGTTTTTCATATAGATTAAGAAATACAGCCTGACTGACGCTTTTGTCCAACAAACAAGCATCAATTTGGTTAGTAAGCATaggtttaacatttaaaacaatgaagtaAAGAAATGTGAAAGTGTATCATTCAAGTACTATGAGCATGCAATAGTAGGTGACATGTGTATCAACTTTATATCAAAGATCTGAAAGGGCACCTGATACAACAGCACTGGGAAATAGTTTCATGGGCCGACCAACACTAGAGACGCGTTTTAATCAGATGCATTTCTTACCAGTTTCATACTGGCGAGAGACACAGATAGCTGAATCATATTTATTAGTGTACAGTACATTAGAGATTGTTTACTATATTTGTAATAAAGGCTTTGCATCAGATGTGTATTTGTTGAAGTGGCACAAAGTACCAAGCGGTTAGTGTAAGTTAGTGATGTGCTTTTATGTCCACCACTACTAAATGGAATTGATTAAAAACACGTAAATGATCAAGACAGACATTTCAGCTCAGTTTAGATTAAATGACAgaattaatgtatatgttaaaGTAAAAGATTTTGTGGTGTCTACACCCCTCCTATTTTACCTGGTATTTACTctgaagatatttatttaatgattccTTAATTTAAAGTATTGATCCAAAAATTGTTGGTCACCACAGCTAAATTTAAAGTGCCTGCTTCTTTACTACGGTCTCCAGGAACGAGCACTTGGGGGAGAAGATATAGCAAGCcgaattatcatttagagagatctaTGAATGCacttcaagatatctcaaaatatttgaagatatcttaatgatttgaagatatctttaaataatttcgagatatctccaaatgacttcctgtatgttggctgagattatcacttcctgtttcctcattcagttaaattagttaacaggaagtgataatcgtgggctacatacaggaagtgatttgcagatatctttaaatgaattaaaggtatctctaaatgatcatttggcttgccatagagaAGGTGCTTTGCAACAGAAACGCACACAAGGTCCATTCGGGTTAGGCCTCTATCTCAGCAGTGCATCTGCATCTCAAGACCAGATCTGAAGTTATTTGATTAAACCTGCTGTgcaaaaaacattcaattacaaCGTGGAAGCAGCCGGGCTCCTACTTTATCTTCTTATAGATACAGCACTCCTCTGGACAACCgacctgacctgacctgacctgTCCAGAGCGGCATACAAAAAGTCTAGTTTTCCCTGATGAATATCTGTGTGCAATTTTATTGGGAAGATAAAATCCAGCATTGTAAAATCAATAATCTCATCCCAAACACGAGTAATAGCAGAATCGTCCACCTTCTGAAGCACTGCTGAGCGTCTTATCGTACGATCTCCTGGGCTGCCGCCTGCGGTCCGAGATACAGATCTGGATTAAATTATCCCTAAACGCGTTGCACGACCACGAGCTCCTCGGCACGAGCGACGTGGTGCATAGCGGTGCAGCCAAAACTAACGTGTTCCTGCCGAAATGGCCAGATCGACGACAGAGTCAAGATTCTGCTCTTTGATTGTTGCCAAAGTGTTTTTGCTttctcattattgttattattattttttttttacacaatgctTAAGATTCGTAGCCCAAACGGACGCTGTTTTGGAAGAGGTTCTGCTTTGGCTGCTGCCGTAATCCAGACCTGTAGCTCAAGCCCTGCCGGTGATATTAGTTTTCTATGCAGTTGCCTTTCTGAGTGGGTCATAAGGATTGATGAGGCCTATAATCCCCAGATTTACTGGCTGCGTCCAGGCACTGGAGCTGATTAGGTGCCGGCGCAGAGAGCCCCGATTGCATTCCTTCGGGTTGGCAGGAGGTGAACGTCGTCCTGCGCTCTGCCACGCCTCGGCTACACAGCAACCGCTTCTCGTCCACACCGTTCAGTTGACTCTCGCACAGGTCCGCCAGGGCCTCGGCCTGCTGGTGCAGTGGGAGGGACTTGAATCTTCGCTGGGCCAAGTAGAGGAAGGCCTCCACAAATGCCTGCAGGCCCATTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74837 True 2077 lncRNA 0.42 1 3640038 3642114

Neighbor

gene id symbol gene type direction distance location
AMCG00019946 NA coding downstream 110402 3523288 ~ 3529636 (-)
AMCG00019947 NA coding downstream 142292 3496276 ~ 3497746 (-)
AMCG00019944 NA coding downstream 260441 3340802 ~ 3379597 (-)
AMCG00019945 garnl3,LOC102797662 coding downstream 312287 3323779 ~ 3327751 (-)
AMCG00019938 prrx1 coding downstream 382201 3255212 ~ 3257837 (-)
AMCG00019950 NA coding upstream 32993 3675107 ~ 3706097 (-)
AMCG00019949 LOC107599025,LOC107725315 coding upstream 80781 3722895 ~ 3728526 (-)
AMCG00019952 phf19,LOC106580128,LOC106585785,LOC107557185 coding upstream 464883 4106997 ~ 4133823 (-)
AMCG00019953 NA coding upstream 500876 4142990 ~ 4164282 (-)
AMCG00019954 NA coding upstream 522685 4164799 ~ 4172609 (-)
G59825 ttll11,LOC107579646 non-coding downstream 42278 3597205 ~ 3597760 (-)
G59810 NA non-coding downstream 148989 3490718 ~ 3491049 (-)
G59556 NA non-coding downstream 1064368 2574804 ~ 2575670 (-)
G59485 NA non-coding downstream 1418844 2195803 ~ 2221194 (-)
G59484 NA non-coding downstream 1447491 2192334 ~ 2192547 (-)
G59826 NA non-coding upstream 3925 3646039 ~ 3647334 (-)
G59852 NA non-coding upstream 28909 3671023 ~ 3675014 (-)
G59853 NA non-coding upstream 138784 3780898 ~ 3796706 (-)
G59862 NA non-coding upstream 397401 4039515 ~ 4039918 (-)
G59880 NA non-coding upstream 453236 4095350 ~ 4095984 (-)
G59806 NA other downstream 159929 3479782 ~ 3480109 (-)
AMCG00019942 NA other downstream 454073 3166237 ~ 3185965 (-)
G59720 NA other downstream 528691 3107801 ~ 3111347 (-)
G59712 NA other downstream 605703 3031856 ~ 3034335 (-)
G59545 NA other downstream 1133018 2494899 ~ 2507020 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 1370330 5012444 ~ 5061512 (-)
G60118 NA other upstream 1621800 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 1634548 5276662 ~ 5278291 (-)
AMCG00019992 NA other upstream 1649476 5291590 ~ 5292673 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other upstream 2517463 6159577 ~ 6172474 (-)

Expression


Co-expression Network