G59852


Basic Information

Item Value
gene id G59852
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 3671023 ~ 3675014 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU74865
CGGGATCTTTAGACGGAAAACAAACCAATTGCAGAAAGAACCTTTAAAAGAGTGGTGTGAGACGCACAAGGGCAGAAACGACAACAATAAATGCTTTGCCAGAGCCAACAAGAGTCCCCCTGTGCGTTCCTGATCGGAAACcgttttccattattttcaatggaAGCTCTTGTTCTGATATTGAAGACGGGGAGGTCGACGATGGGAGAATGAGCTCTTTCCCGATCACAGCGCAGTTTGGACCCAAATGCATATACAAACCCACGAACTACACGCTGGCCGCGCTTTATCTCCAGATGAATCTTCTGCTGGGTCTGAGATGTGACTCCTGGAGGAAGTGCGGACCGCTGCACTCTGTCAATACCGATTGAGGCTCGTTCAGGCCCGCGATATAACCAATGTTTACCATTGTCAGTGCACCTGTTCTGGTTTGTTACAACCCTTATGTTTCCCTTAAACTGAGGAGCAGGTTTTAAGAGtttctgtaattaaataacTTCCTGCAGTAAGCCATCccattatgtatgtgtgtgtgtgtatatgtgtatatatatatatccacaatCTCTGGTGACTGAAATCAGTATGATCTTGGACTCTGATTGGCCGAGACAATAGGAAAAGATCTTCAGACTTTGTAAGGAGGAGCTGAAGGTGGAAAGGCTTTGTTTGCTCCACGCGATGAAATTTCTCCATCAAAGGAGTGGAATGTAGTTTCTGAGTCGGGAGTCGAGGGGCGGGATCGTCATTCCTTTCTTTCGCTGCAttaatcagttaaaaaaaaaaaaagaaaatgggctTGTCTTGCGTTTTGACCAAATTTTAAAGCTGAGCCATCACACTCATTAAGgtttttttgctaaatgcatGTCATTTCAGAGGCTTTGCATGTTTAACGATATCCTATCTGACACTTTTTATCCACGAGAGGCGCTTCCTGGTCCTTCTGAACCCGAATGGATGATGTCCTCAGAATGATCCAGCTACTGGTCTCATTAACACACAGAACCGGGCCTGGCAGCGAAGCCGAGACAGACAGTTCAGCCGTCGGGACGGGCTGAGGGGAGGCTGGGCCGGTTCACTCCAACGTCACTTATTTATTGGTCGAATTCTTAGTGTGTCTTTATTTAGGAGAAAAACGCAGGGCCGCATTACTGACCAGATGCCTGCCCTAATAATCTACGTCAGCTGTGTTGCCAAAATAGTTCTGCGACAGTTTTCACTAAACAGGGAACACAGGCTGTAAATATCCCTGTCTTCCACGTGCAGAGTTGTTTAAATGCTTACTCTTTGTTTCAAGCAGCAGTTATTAGTGCTTAACAATACAGCTGCACCTGTATCTCTAGTGTTCACAATAAAGGGAAAGTTGGTTTTaggacacacaggcacacacagctGAAACTGGCATCCAGACaatttacagttatttaaaaaagaaacataatccAATAGTGTTGAcaataatcaaaaatatatgGGTGTGTATGAATGAATCTGTTGAACAAGGGCGCAAATGACATTTtccaaatgtgtaatttaactCTTGTTGAGCagatgtgtgcatgtatgtatacacacataaacacacacatgcacacgcacacacaactcATGTAGCTTACCATGTCTACTGAATGTCAAGATGCTAGTCAAAAAGCTTTTGTTGGCATTTCTTATAATTTGACTTCATCTCCCATTGCTCTGACACCAAACAtttctgcattatatattttgtatatttttgtatttttttcttacctGTAAGATATTTTTTTGCTGCATGTGTCATGCCCAGTGCTACATATAGTAGCACAACAGGTATAGTTTGTTTTAAGTTGTCAATGGTAAGGAAGAAGCTACTTCCACTATATAATTTGCTGCATACTTTGTATGTgcttaaatataaagaaattaGTGTATTTAGAGGCAAGATGCCTCGctgatgtaaataaaatgttcacaatatttttacctaatgtgatttaaaaaaaaaaaaaacgtttttttctttttgtaaatgttcCTTGTGTTTAATTCTACTGTACTGATATCACATGAATATTGTAAATAGTTAAACTGTTATTCCTGGTGCTGCTTCCTTAGACAGTTTCAGCTTCATTTTACTGCTGTTTagtccttttttttaatgcaggtATTCTCTTTTGAAAGCAAAACACTGACCGCGTGAgcaaaaatatgatatttatgTCACTCATGTCAGGTATTTTGTCTGGCCCAGGAAACTAATGAAATCCTCTCTCAGCAAGCTCTCCAGATCCAGTACTGTGAGCAGAATCGTAAAGAGACGCAAGCACAAATCCCCACTGACCCTCAGTCCTCTTCACCCATGCACCTCTTCAAAAGGGAGCTCTGTGCATTTCTGTCTCGATTGGTTGACTTGGCAAACGTTTCTTTCTGCATCTTGTTCGCTGCCCATCATATCACCAGTAGTTATTGTCTGAAACAGCAGCTCGTGGCGCTAACACGGTTTTTGAGACCATCTGCTTATTGCAGTCGGGTCCTGAATTTGAACAGGACCCTCAGCACAGTCTGGTAGGAATCTGGTCTTGGATTGACCAACGTGTGTTTAAATGCTTTTCACCAGGCCGTGTCGTACAGAGCTGCTGAGAATCAATTAATTTTCCTCTCAGATCTGCAACTCGCACATCCTTGAGGTTCCACACCTCGGAAACGCCTGCAGAGACCTGGGCTGCTTCTGGCCTCTGATATTGACTCGTGTCCAGGGGTTGGAAggtgaatattttattatcttacCTTATAAAGGCTGTCAGTGTTTTGCTTTGACAAAGGGATACTCCTGTAAAGCGACTCAAACCACTATATTGGGCAGAAATCACTGCGTTCTCGAAGTCTGTGGTTCTGTCCTCTCGCTGTCTGTACCAATGTTCCAGTCGTACAGAagaaattatttgtaattcactAGTCTAGCACGACACCACGCAGTTTCAGGAGCGGGTATATCTGCTAGTCAGTCTACTAATACAGTAGATTTCATAAGAGGGaagaattaaatttaaattaaatgtattgattgaggACTGGATCAATTTAAGCCAATTAGCGTACTTTAGTGATTTTAAATCGatcacttattttaattgatacaaaaaaatccCACGCAGAAGAACAATCAATAGAGTATCTGGATTTAATATGCAATTGTTGTACAGGAACCAAACAATAATTATacgataaaaataaaatattgcaaattTCTCTTTACTGAAATTCCCACAAGTGGTCTTATTTTACAGTCTTAACATGACTGCTAactacagagaaagaaaaacattgcttcttttatgcatttttgattcaaaaagctttgtaaaataaatattatcagattcaatttacagatttttatatatatatatatatatatatatatatatatataatttcaagccattttaatttatttaagttcCATGAGTCATCCCAAATTAAGTAAAACAACAAACGATTAAATGTCTAAGTGAATTAAGGTGCCCATTGTTGAAGAATAAAGGTGTTTACTATTTAAGATAAAAAGGTAAAATAGTAGGGGGTAAAAGATCCAACATACACGTCAGTGCGTGTGGAGATATACTCTCTCCCTGACTTCTGGTGTTGCAAATAACTGGTTTCTAAAAAGctgttgtatgttttataatcTCTTCTAGAGTCACTTTTGTAAGTATGTTAAAAGTAAAGTATTCGCTGGACTCGCTTCAGTATACgacaacgacaacaaaaaaGACATGTAATAATGTACAGAGGAAGTTGTTCGTGTTTAAGAAAATGTGGCTGTGCAATTTATGTACATTTGCAACTAGaattattaaagttttatttagCTATTTTAAGTTTCCGCCTCGTGCCGTttttcatgctgtcagcgcctCGTTTCTCCTAATGGCACGAGCGTCAAACATCCTGCTggacagagagaaaaggagcGTTTCCAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74865 True 3972 lncRNA 0.39 2 3671023 3675014

Neighbor

gene id symbol gene type direction distance location
AMCG00019946 NA coding downstream 141387 3523288 ~ 3529636 (-)
AMCG00019947 NA coding downstream 173277 3496276 ~ 3497746 (-)
AMCG00019944 NA coding downstream 291426 3340802 ~ 3379597 (-)
AMCG00019945 garnl3,LOC102797662 coding downstream 343272 3323779 ~ 3327751 (-)
AMCG00019938 prrx1 coding downstream 413186 3255212 ~ 3257837 (-)
AMCG00019950 NA coding upstream 93 3675107 ~ 3706097 (-)
AMCG00019949 LOC107599025,LOC107725315 coding upstream 47881 3722895 ~ 3728526 (-)
AMCG00019952 phf19,LOC106580128,LOC106585785,LOC107557185 coding upstream 431983 4106997 ~ 4133823 (-)
AMCG00019953 NA coding upstream 467976 4142990 ~ 4164282 (-)
AMCG00019954 NA coding upstream 489785 4164799 ~ 4172609 (-)
G59826 NA non-coding downstream 23689 3646039 ~ 3647334 (-)
G59827 NA non-coding downstream 28909 3640038 ~ 3642114 (-)
G59825 ttll11,LOC107579646 non-coding downstream 73263 3597205 ~ 3597760 (-)
G59810 NA non-coding downstream 179974 3490718 ~ 3491049 (-)
G59556 NA non-coding downstream 1095353 2574804 ~ 2575670 (-)
G59853 NA non-coding upstream 105884 3780898 ~ 3796706 (-)
G59862 NA non-coding upstream 364501 4039515 ~ 4039918 (-)
G59880 NA non-coding upstream 420336 4095350 ~ 4095984 (-)
G59907 NA non-coding upstream 633662 4308676 ~ 4308945 (-)
G59922 NA non-coding upstream 946963 4621977 ~ 4622357 (-)
G59806 NA other downstream 190914 3479782 ~ 3480109 (-)
AMCG00019942 NA other downstream 485058 3166237 ~ 3185965 (-)
G59720 NA other downstream 559676 3107801 ~ 3111347 (-)
G59712 NA other downstream 636688 3031856 ~ 3034335 (-)
G59545 NA other downstream 1164003 2494899 ~ 2507020 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 1337430 5012444 ~ 5061512 (-)
G60118 NA other upstream 1588900 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 1601648 5276662 ~ 5278291 (-)
AMCG00019992 NA other upstream 1616576 5291590 ~ 5292673 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other upstream 2484563 6159577 ~ 6172474 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G362064 NA non-coding CI01000154 null 707653 ~ 707954 (-)
rainbow trout (Oncorhynchus mykiss) G377835 NA non-coding NC_048569.1 CM023223.2 20762944 ~ 20766785 (-)
mexican tetra (Astyanax mexicanus) G300178 NA non-coding NW_019172831.1 APWO02000049.1 78822 ~ 144329 (-)