G59880


Basic Information

Item Value
gene id G59880
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4095350 ~ 4095984 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU74898
CACATCCAGAGTCATTAGAAACACAAGCATCTGAAGATTTTATTTAGACTTTACAagtaaaaaattacaaaatcttCAAACTTCAAAAATCTCTCTAAAGTGCAATGGCTGTGCACGTCTTTATGGAGTGAACAGCCACCACACTGACTGCAGCCACTGTACCGTGACAACCAGATCATTGCATATGAACTAGTAAAaggttgtaaaaataaaaagcttggTACTGACCCTTCCCCCCCACCTTTCCCTTGCATAGGCCACCAGATAGTCATACATCAGCTTTATAGAAGTTACTGTGGATCTCTGTGCATCGGTTTTGTAGTGTTTTCATTggtcatttaattgttttgtagtatgtatgttttgtggaGCTCTGAAGGTTTATTTCACATCCTGGTTTTTCAGGCTATATTACTAAGCTCGTGGCCATTTGAATAGGCAAATTGTGCAAACAAAACctgatgttaaaatgttaaaaatataacctACAGAAATGGTCGGGGGGTTATTCCAcacagttaaatataaatgtgtaaagctgaactacttttaaaaactgaagtCTTCCAAACCGTCAAATTTTCCAAAGCATAACATAAAATCCACtgtgtaaacacatttttgcccgtttttgt

Function

GO: NA

KEGG:

id description
ko04976 Bile secretion
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU74898 True 635 lncRNA 0.37 1 4095350 4095984

Neighbor

gene id symbol gene type direction distance location
AMCG00019949 LOC107599025,LOC107725315 coding downstream 366824 3722895 ~ 3728526 (-)
AMCG00019950 NA coding downstream 389253 3675107 ~ 3706097 (-)
AMCG00019946 NA coding downstream 565714 3523288 ~ 3529636 (-)
AMCG00019947 NA coding downstream 597604 3496276 ~ 3497746 (-)
AMCG00019944 NA coding downstream 715753 3340802 ~ 3379597 (-)
AMCG00019952 phf19,LOC106580128,LOC106585785,LOC107557185 coding upstream 11013 4106997 ~ 4133823 (-)
AMCG00019953 NA coding upstream 47006 4142990 ~ 4164282 (-)
AMCG00019954 NA coding upstream 68815 4164799 ~ 4172609 (-)
AMCG00019955 si:dkeyp-51b7.3,fibcd1,LOC106585783,LOC107665003,LOC107598982,LOC107725318 coding upstream 89321 4185305 ~ 4195180 (-)
AMCG00019956 fibcd1,LOC105015243,LOC108428067,LOC107574583,LOC107596897 coding upstream 159288 4255272 ~ 4263577 (-)
G59862 NA non-coding downstream 55432 4039515 ~ 4039918 (-)
G59853 NA non-coding downstream 298644 3780898 ~ 3796706 (-)
G59852 NA non-coding downstream 420336 3671023 ~ 3675014 (-)
G59826 NA non-coding downstream 448016 3646039 ~ 3647334 (-)
G59827 NA non-coding downstream 453236 3640038 ~ 3642114 (-)
G59907 NA non-coding upstream 212692 4308676 ~ 4308945 (-)
G59922 NA non-coding upstream 525993 4621977 ~ 4622357 (-)
G59932 NA non-coding upstream 552038 4648022 ~ 4651002 (-)
G59938 NA non-coding upstream 572366 4668350 ~ 4668869 (-)
G59939 NA non-coding upstream 572974 4668958 ~ 4669158 (-)
G59806 NA other downstream 615241 3479782 ~ 3480109 (-)
AMCG00019942 NA other downstream 909385 3166237 ~ 3185965 (-)
G59720 NA other downstream 984003 3107801 ~ 3111347 (-)
G59712 NA other downstream 1061015 3031856 ~ 3034335 (-)
G59545 NA other downstream 1588330 2494899 ~ 2507020 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 916460 5012444 ~ 5061512 (-)
G60118 NA other upstream 1167930 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 1180678 5276662 ~ 5278291 (-)
AMCG00019992 NA other upstream 1195606 5291590 ~ 5292673 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other upstream 2063593 6159577 ~ 6172474 (-)

Expression


Co-expression Network