G59963


Basic Information

Item Value
gene id G59963
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4796726 ~ 4800269 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU75008
gcctcttttattttttacatcagCCATTGAGtagtatatattaaaacaagttttctttttccttaaaaaaaagaaaccaatgaAAGAAATCATGCAGATTCTTAACTCATAAACCTAAATAACacagtcttttaaaaatgaacatgcCAGATAGTCGATAGACCAATAGTCAAAtagatttttcttaaatcacGTTAATAATCTTGATATTTTtagcaaaaacaacacaaaataaagttacCCAACCCACAGGTTTAGGTAGAAAATAACTATTAACATCTTTGACAGTATCATCGCTCATACTTTAAAaagatataaagaaaacaacacaaaccatACACTGTTTGACTGCATGAGAGATAATCCCTTATCACCACAGAGTGTTTTCACATCGCTTCGCCCCTCAAATGAAAGACCTGTCACTGCCTTCCCTCAGACACAGAAACAACCGAACGCAGGCCTGTACTGACATTCATCAACATGTCTGGCACCCCAGGACCTTTATTGTGTCGTGAATATGAGATGTGTGTGATACAAATAACTGGCACCAAAGCACACTTAAGGAAGGCTGAATTTaccaaaaaatcataataatgaaatggCAGCAGAATGGAAGGTAAACTGTTATTCCGTTAAACTGTTAAACTGCTTGCATGAGAGGGCAGATTATCGGCTCTAAGTAGACACTATTTACACATTACTAATTAATGGGTAGTTACAGAttagttattatatttatatttgcagtATATCTAACATAATATGGAGGGAACGACAGGGGGGAAGAAACCATCTGCCTGAGATGTTACATTGTAAGTAACAGCAGACCAAATTGGTACTTGCAACAGTGCCCACTGTGAATGCAGTTATCAAAAGTACAGTTGTGCAGTTCCATCTAAACAGCTGATATAATTTACTGACATGTTAACCTCAGTTCTAGTGCTGTCGCTGGGAAATAAATGTGGCACATCTTCAGTGGCAGTTTGTTGCCCTTTTGCCATTCAGGTTCATTactaaatatattgaaaataattgtatttgacaGACACTaacaatgcatacattttatattgcttcAAGGCTTCTATCCTTTTCGCAGGATCTACAGTATTAATGTAGTGTTTCTTGTTATCGGGGAATGGCTGTAAAATGGTGCCAAACATGTTGGTTATTCTAAGCAGCAGATTCTTATTGAGCGCTTTTGTAGCTGAAACAATAATTTCCCTTGTGGGTCAGAGCCAGATTGGATCCCAAGCCGCTGACGACTGAAAGCTGCCGTCCCAGTTTGCAGCGCTTTACCTCCCCCAGAAATTACTCTTCTACTATAATGAAAGATTgaaccaacaaacacacagaatgaAACCATGAAGTGAGTTGGACATGATTGGGTGAAAGACTCTCGTTcccttttttacatttcaagaacAGTCTCCGCGCTCCTAGAAAAACATTTCGGTTCCAGCAGCAAACATAACCACACTTCCAGCAGACCATTCAGACACGCTGTGTTATTATGTGTATggatgttttattatgtattttttctcaaaatacacagctgttGTTGACAATATGTACACACTTAATTTGACACGTTATGTGTGATATTATTCATGAAACTATACTTGTTAtcaagtttatatttatatcaattCAGCCTAAAAGGGTTAAGACAGAGGTTGTGTAAACGTTTGACTGCCACTCTATAAATCAATCATAAGATGTGTTGGTTTTACCACAATAAATGATTGGCCACCACCTCCCCTTAAAAGAAAACTGATCAGATCCAAACATGTATAATGTAGTTGGCAATACAGAATAATGAAAGAGTCAGAAAAATGACAGTTTCATAGCATCCAATTCATCCCACACCTGATGCTATTTTAACAACTGCATTGCTCTTGCAGAGACCAGAACCTTTTATTGCAAGCAGAAAAGATTTAGGACCATGACAATGAGTCAGATAGTATAAACATTGATCTGGGGTCTCTCACAATGAAATAGTACCAGAACCAAATTGCTCCTACCACTTTCCTATACAATGCAACTGGCCTGAACCACTGAAATCCACCTTTTCCTGGGAGCAATTGCATTGTGTCTACAATGTGGCATCTGGTAAAACACATGGCAGTTTAATCAGCCcttataatttttttcacaGTATGTACAGTTAATTAAAGAAAGCATTGTGTTTCTATACAAGTCTGTAGCACTCTCTGTACAGGTAGGAaaagtatatacaatacatggaCACAGTTtggtaaaatgtacaatttgaaaACTTCATCAACAAAACGACTGAGAAAAGACTAATGTCGTATGCTGTCTGATTCACAACTTAAGAAAACTACTGTTAGATCTGCAATCctactgtatttcttttttatatactgtaatacTATCCACATGTTATTCACTGGCATGGACATCTTCATAAAAGATCTGATCATTGTCAAGGCTATGACACGTTGCAATGAAAACCACTTACTTTTGATCACCATACAAACATTGAAATAAGTTCCTCCACCAACTGTAACGTAACGTTTTGCACGGCTATCAAATTAATTCTGTTCAAATCATAAAGGAGGCAACATATACAATAGTGTCACACACTCTAATGCACAAAGGTGTATGTTCTTTCAACATTGCTATAAAACACAAGGGCGTTTTGATAAAGGATGTTTCAACAGTGCAAGCACAGTGCAGTTGTTTCTCATTTCATTGTCAAAGTCTTCAAATGCAGTCTGACACATTGTACTGCATTGCTCAGCAACACACAAACTGGTGTTCAGCTTGGCATTGgcgaaaagaaaaagaaaagcagcacCATTAACATCTGATTGACAGTTCTGAAAAATATGCATCATTAAGGATCTGAAATTTCCAAAGAGGGATTCTCAATTATGTAATCCCAGGAGTCTTGTGTTCACAGAAAGCTGATAGGATCATTTTAGGATATGTTTTcgtttgtcatttgtttgttgttttggtctAGAAGGTGTGATTTTTCAAAATGGCCGAAAGCCTGGGTTGAATCAAAGTTGTGGGGCTGCCATAAGCTGCAGCAAGTGTAGCGAAAGTAGCGCTAAACGGATCGATTGAATACAAGGCACATGCAGTTTTTTAGAAACTATGAAATGAGGAATTTGGATACAGTTTCCAGATGACAGGGGCTTACTGCCGAGTCTGAACACTGTGGTTGCCCGTCGAGGTATTTTGAGTGTACAGGCAACTCCTGAAATTAGTTAGAGAAGAGCGTGGCCTTCCAGAATGTCCCACCAGCTGCCAGTGAGGAAGACTCAAGTGTCCCAAAAGCTCCACCTTCCCCAGTTCATTACCTGAGATTCCCTTACCCTAGTCTGACATACCGGACACTTGGCTGTTAACAAATGACACCGCTGCATTTACAGCAGTGGAAAACTGTTTGATACaacctaaaatatgttttaaggtCTTTTCAAGAAATCTTCTGGAACTGCTGCATAGAAGtagatattaaaaaagcaaaaagcaagtTCAGTCACTGCAGGAAGGAAAGGTTACT

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0046031 ADP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0016052 carbohydrate catabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75008 True 3544 lncRNA 0.38 1 4796726 4800269

Neighbor

gene id symbol gene type direction distance location
AMCG00019964 fam78a,LOC106563259 coding downstream 29867 4755524 ~ 4766859 (-)
AMCG00019960 NA coding downstream 168857 4622417 ~ 4627869 (-)
AMCG00019956 fibcd1,LOC105015243,LOC108428067,LOC107574583,LOC107596897 coding downstream 533149 4255272 ~ 4263577 (-)
AMCG00019955 si:dkeyp-51b7.3,fibcd1,LOC106585783,LOC107665003,LOC107598982,LOC107725318 coding downstream 601546 4185305 ~ 4195180 (-)
AMCG00019954 NA coding downstream 624117 4164799 ~ 4172609 (-)
AMCG00019968 uck1,LOC102793675 coding upstream 75317 4875586 ~ 4886898 (-)
AMCG00019970 NA coding upstream 98671 4898940 ~ 4908555 (-)
AMCG00019972 sh3glb2 coding upstream 130234 4930503 ~ 4940565 (-)
AMCG00019971 NA coding upstream 168921 4969190 ~ 4983211 (-)
AMCG00019975 NA coding upstream 192367 4992636 ~ 5005983 (-)
G59958 NA non-coding downstream 41534 4750487 ~ 4755192 (-)
G59941 NA non-coding downstream 123117 4673284 ~ 4673609 (-)
G59940 NA non-coding downstream 124558 4671780 ~ 4672168 (-)
G59939 NA non-coding downstream 127568 4668958 ~ 4669158 (-)
G59938 NA non-coding downstream 127857 4668350 ~ 4668869 (-)
G59979 prrc2b,LOC107562325 non-coding upstream 44528 4844797 ~ 4848796 (-)
G60034 dpm2,LOC107664400,LOC107681851,LOC107712384 non-coding upstream 185412 4985681 ~ 4989055 (-)
G60089 NA non-coding upstream 318082 5118351 ~ 5160697 (-)
G60088 set,LOC105014167,LOC100696975,LOC102777863,LOC107083999 non-coding upstream 352789 5153058 ~ 5157193 (-)
G60099 NA non-coding upstream 361737 5162006 ~ 5162521 (-)
G59806 NA other downstream 1316617 3479782 ~ 3480109 (-)
AMCG00019942 NA other downstream 1610761 3166237 ~ 3185965 (-)
G59720 NA other downstream 1685379 3107801 ~ 3111347 (-)
G59712 NA other downstream 1762391 3031856 ~ 3034335 (-)
G59545 NA other downstream 2289706 2494899 ~ 2507020 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 212175 5012444 ~ 5061512 (-)
G60118 NA other upstream 463645 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 476393 5276662 ~ 5278291 (-)
AMCG00019992 NA other upstream 491321 5291590 ~ 5292673 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other upstream 1359308 6159577 ~ 6172474 (-)

Expression


Co-expression Network