G60034 (dpm2,LOC107664400,LOC107681851,LOC107712384)


Basic Information

Item Value
gene id G60034
gene name dpm2,LOC107664400,LOC107681851,LOC107712384
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 4985681 ~ 4989055 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU75100
cggacatctgcgctacacgaaccgCAGTTGTGTCAGTGGTTCATCTGGTGTTGGTGCACAGACTAATCCCTGATACTCACAAACACGTCTGCATGCACTAAGGGCAACATGTACCGTCAATCCGaacatcaaacaaataaaactacatttcccagcagACATTTAATCTGGTGCGTTACAAGAGTGGCGGTCCAATCAGAATATACCGGAAGTTATGTAAAATCAACGCGTTTCCACAGGAAGTGACGCACGCAACATGGCGTCAGGAGTGGATCAAGTCGCTGGGATGGGCCTGGTTGGCTTCAGTCTGATGCTATTCACCTATTACACAATCTGGGTTATAATTTTGccCTTTGTGGACAGTGACCATGTGATCCACAGGTATTTCCTGCCCCGGGAATATTCTGTAATATTGCCGGGTGTTGCTGCCTTGGTTTTAGTGCTGTTTGTAGggACCTTTATTGGTGTTGTTACATGGAAGAACAGAAAACCCAAGAAACTGGATTAGAAGGAACCGGGACAGTTGTGCTCCTGCTCTGTGGCCCAGATCTCCAAGACAGGACTTCAGGCACTGGGGCACCTGATGGGTAGAGCTTAACCTCACAAACCTCTTTGCCCATTCCAGGGATGAAATCTCCATTGCAAATTTGAGCCGTGTCAGAATTCCCTTGATGTAAATATTATAACCCTGGTCCAGAGAACACAGGTTTGTGTGGTGAAGACAGCTGTGTAGGTGGTTTACATTCCTATGCATGTTGCCTGCACTTCTGCAGCGCTATAGTAAAGCACAGCACCTGCAGTCACTGTGTACATGGTTTTATCCTGCTAAGTGTGCCCTGTCATTAGCACCAAAATAATGCAGGCAACTTGTGCTATCGTTCAAGAGTTCATGTAACCATAGGTTGTTAGGAATTTAAAAATAGGTGAATTAAGGGACATGCATTTTTAAGTCTTACAGTTGCCACTAGAGGGCTTaagaaaactgttaaaatgcTTTAACTACAAATTCCATTGAAACATGTAATagaataatctttattttatatagcgcctttcatgTTAGCACATGCCAAAGCACTTAGATAGCTACTGAAATAGCTACGCATCAGTATgtaagtatatatgtatatttacatgcacacatatactTATTGGTAAACAGCTGTTATAATAACatcttgtatatatttatgccCAGCATGTGGTTAACTTTGAGACATTGCTTTCCGGTGTTAAAAggatataataaaatatcagaCATTATCC

Function

symbol description
dpm2 Predicted to enable enzyme regulator activity. Acts upstream of or within muscle structure development. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of endoplasmic reticulum membrane. Predicted to be part of dolichol-phosphate-mannose synthase complex. Is expressed in brain; cloaca; pronephric duct; solid lens vesicle; and vertical myoseptum. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation Iu. Orthologous to human DPM2 (dolichyl-phosphate mannosyltransferase subunit 2, regulatory).

NR:

description
PREDICTED: dolichol phosphate-mannose biosynthesis regulatory protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75100 True 1266 lncRNA 0.42 4 4985681 4989055

Neighbor

gene id symbol gene type direction distance location
AMCG00019971 NA coding downstream 2470 4969190 ~ 4983211 (-)
AMCG00019972 sh3glb2 coding downstream 45116 4930503 ~ 4940565 (-)
AMCG00019970 NA coding downstream 77126 4898940 ~ 4908555 (-)
AMCG00019968 uck1,LOC102793675 coding downstream 98783 4875586 ~ 4886898 (-)
AMCG00019964 fam78a,LOC106563259 coding downstream 218822 4755524 ~ 4766859 (-)
AMCG00019975 NA coding upstream 3581 4992636 ~ 5005983 (-)
AMCG00019974 naif1,LOC107754425,LOC107559603,LOC107560040 coding upstream 76585 5065640 ~ 5069039 (-)
AMCG00019983 NA coding upstream 142991 5132046 ~ 5153053 (-)
AMCG00019982 NA coding upstream 169304 5158359 ~ 5159320 (-)
AMCG00019985 sptan1 coding upstream 178311 5167366 ~ 5206880 (-)
G59979 prrc2b,LOC107562325 non-coding downstream 136885 4844797 ~ 4848796 (-)
G59963 NA non-coding downstream 185412 4796726 ~ 4800269 (-)
G59958 NA non-coding downstream 230489 4750487 ~ 4755192 (-)
G59941 NA non-coding downstream 312072 4673284 ~ 4673609 (-)
G59940 NA non-coding downstream 313513 4671780 ~ 4672168 (-)
G60089 NA non-coding upstream 129296 5118351 ~ 5160697 (-)
G60088 set,LOC105014167,LOC100696975,LOC102777863,LOC107083999 non-coding upstream 164003 5153058 ~ 5157193 (-)
G60099 NA non-coding upstream 172951 5162006 ~ 5162521 (-)
G60100 NA non-coding upstream 174709 5163764 ~ 5163995 (-)
G60101 NA non-coding upstream 176212 5165267 ~ 5165488 (-)
G59806 NA other downstream 1505572 3479782 ~ 3480109 (-)
AMCG00019942 NA other downstream 1799716 3166237 ~ 3185965 (-)
G59720 NA other downstream 1874334 3107801 ~ 3111347 (-)
G59712 NA other downstream 1951346 3031856 ~ 3034335 (-)
G59545 NA other downstream 2478661 2494899 ~ 2507020 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other upstream 23389 5012444 ~ 5061512 (-)
G60118 NA other upstream 274859 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 287607 5276662 ~ 5278291 (-)
AMCG00019992 NA other upstream 302535 5291590 ~ 5292673 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other upstream 1170522 6159577 ~ 6172474 (-)

Expression


Co-expression Network