G60102


Basic Information

Item Value
gene id G60102
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 5166359 ~ 5167290 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU75188
gattgcttaaaatacacatttatagtgaaaatgtaattctatagtcatcatttataaataatatattctgaatattaACATAAGTGGTTGTCTagaataacttttaaaatgtaaatatcagcAAATAACCATTGAACTTTAACTGAACTttgattttaactttttcattAAAGTATAACAAATTAGCATTGAGATGGTAGCCCAGTTTCAAAAGGCCCCTCGTTGTCCCACTTCACTATCCAGATGTCTTGAGTGGCAGCAGTCTTGTTTATACTGAGCTCAGGATGTGTTTTTGATGGTATAGTTCACACTCCTGATGTAATTGAGCATTTGTTAAGACAACCAGAgaaccaaaaaaatattaaacaaccTGAGGGCACATTTTTAAGTAGGGAATGAGAAGGCAGCGGTGGTCCCGAGGAGGTGCCTCGTATACCTGTTACTCAGCCGCTTCGCTCGCCAGCTGTTCCAGGTGTGCAGCCTCTCTGGGTCTCTGCTCCGTGAGCTCACTGCTCAGTTTCCAGATGTTGACGGTGCCATCGGCGCTTCCAGCTGCCagcaggtgtgtctgtgtggggttGAACTCCAGGCAGTAGACCGGCTGCCCCTCGGGGTTCTGGGCGATGGTAGCGGCGGGCCTGAGGGAGCCCTGGCCCAGATCGAACAGCAGCACCAGCCCTGTGGGGAGAGACTCGTTTGTCATGAGGGCGATGCTCTCTCCTAGGGCTCAAAGGGTCATGAAGCTCACGGAAGCACTTTAGATTCCACTCTTCATTTCAGCTCCTCTCCGAGAGGAAAGGGTTAGTTGTACCCAGaagatttttaataaaaacgTATGaattgaataatatatattcatgtcACCATAATAGTGCGTTTCCCTGGATTCTGTCAAAATAGAGCAGTGATTCGAAATATTGATTTGAGCAAAT

Function

GO:

id name namespace
GO:0042995 cell projection cellular_component
GO:0044441 obsolete ciliary part cellular_component
GO:0044463 obsolete cell projection part cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0120038 obsolete plasma membrane bounded cell projection part cellular_component
GO:0005929 cilium cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75188 True 932 lncRNA 0.44 1 5166359 5167290

Neighbor

gene id symbol gene type direction distance location
AMCG00019982 NA coding downstream 7039 5158359 ~ 5159320 (-)
AMCG00019983 NA coding downstream 13306 5132046 ~ 5153053 (-)
AMCG00019974 naif1,LOC107754425,LOC107559603,LOC107560040 coding downstream 97320 5065640 ~ 5069039 (-)
AMCG00019975 NA coding downstream 160376 4992636 ~ 5005983 (-)
AMCG00019971 NA coding downstream 183148 4969190 ~ 4983211 (-)
AMCG00019985 sptan1 coding upstream 76 5167366 ~ 5206880 (-)
AMCG00019984 LOC102792584 coding upstream 40483 5207773 ~ 5230138 (-)
AMCG00019987 NA coding upstream 66940 5234230 ~ 5234454 (-)
AMCG00019989 NA coding upstream 130163 5297453 ~ 5301869 (-)
AMCG00019990 NA coding upstream 208576 5375866 ~ 5380964 (-)
G60101 NA non-coding downstream 871 5165267 ~ 5165488 (-)
G60100 NA non-coding downstream 2364 5163764 ~ 5163995 (-)
G60099 NA non-coding downstream 3838 5162006 ~ 5162521 (-)
G60089 NA non-coding downstream 5662 5118351 ~ 5160697 (-)
G60088 set,LOC105014167,LOC100696975,LOC102777863,LOC107083999 non-coding downstream 9166 5153058 ~ 5157193 (-)
G60179 NA non-coding upstream 304029 5471319 ~ 5523619 (-)
G60230 NA non-coding upstream 823655 5990945 ~ 5991184 (-)
G60231 NA non-coding upstream 828179 5995469 ~ 5995688 (-)
G60235 NA non-coding upstream 869275 6036565 ~ 6040665 (-)
G60237 NA non-coding upstream 888259 6055549 ~ 6055822 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other downstream 104847 5012444 ~ 5061512 (-)
G59806 NA other downstream 1686250 3479782 ~ 3480109 (-)
AMCG00019942 NA other downstream 1980394 3166237 ~ 3185965 (-)
G59720 NA other downstream 2055012 3107801 ~ 3111347 (-)
G59712 NA other downstream 2132024 3031856 ~ 3034335 (-)
G60118 NA other upstream 96624 5263914 ~ 5265925 (-)
AMCG00019993 NA other upstream 109372 5276662 ~ 5278291 (-)
AMCG00019992 NA other upstream 124300 5291590 ~ 5292673 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other upstream 992287 6159577 ~ 6172474 (-)
AMCG00020017 arpc5l,arpc5la,LOC107571143,LOC107753090,LOC108411248 other upstream 1283332 6450622 ~ 6461428 (-)

Expression


Co-expression Network