G60235


Basic Information

Item Value
gene id G60235
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6036565 ~ 6040665 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU75347
ttttataatacataaatactttgCTTAGTATTTCAAAAaacttttcttaaaacaaacattttacagacaTACTAGAATAACTTGTTTGAggtttacatacatacacaaaataaaccatatacaaaaataacagtgGCATTAAAAAGCAAAGGACAAAATGCAGGCACAGTTGCATATTATAATAGACAGTTCTGTATACATGTAAAAACGACTGCTTTGACCAATACTACAAGAGAACCTTGAAAATAATTCTGACCAAAAATACAATCTGCACAATGTTTGTAAAGGTAAAATTGCATCTAAGTAACTgaattttacattataataGAACCTATACAATGTCCCTCAGTGTATTCAATAATGTCCCAGCTGTAGCTAATACCAAACAGTGAAATCCAGACATGTCGTGCCCCTCAGTCACTCTGTACCATCATATCGCTCTTCACAGAAACGCTACAATGGGACGAGCAGGGTGCCTGGGGAAATTACGACCAGGGGTTTCAGGAAGCGCAACCTAGGTATGTGACATTTTAGGTGCCTCTGCACTTTTGCAGCAATGGGTTTAAGGTCACTTATTAAAGCAATGCATGTTCACAATGTATACTAGTAGATATTGGACTTGTTGTGGGACATTGCTTTGGTGATATGGGGGAACTGTCAATCATAAAGCCATGGTTGAAAGGTTCCTACAAAACCAACTGTCCAACTGTCAATGagtctaaaataatgtaaaacatgtttttgtaactGCACTACTGTATCTCCCTAAGGACATTCTTGTAGTAATGGTTAAGCACACTAGACactcaatcagtcaatcaatctgTGATACTATCTATCAAATTggttggatttgttttttctttggcaAAATAGTGAACATTGCATGTTTTGGTACAAAGTCCTAGAACCCTTTACATaccatgtttaaaacaatacagaaagaaaacacatacaagaaaacaagtagacatttaaatatgtgtaaataataattaaaatcaacaaaattatgaatacaaatacatttaaaaatcctattgaggaaaataaataattcctttCCCAGACAGTTAACCATATTTGTCCAGTGTCAGCTTCTTCTTGTCAGCTATAGGACTATATATACTTCAAAGGGCTGGACATTCAGCACCAGCACTATGCTGTGACCATGACACTGTTTGATGTATGAAGAAGAAAGGGAAACAGACTCGGGAGCTGCTAAAACGAGCTGCCAGAGATGCTTTTTAATCGGCTATATTACACAGGAACTCAGGAAGATCATGTTTGGTGCCAATAATTATGTTCCCACCAGTTTTATTCAGGCCATCTGAAATACCAGATTTCTTATAATAATTTCCCCACAGTTTTAGCTGTTACAAAACAAGGAGGGTAAGAGATTGTAAGTACAGGCAATTATAGCACAACCCTAATCAAAACCAACTGTTCACCACCACTGGCCAAAAAACCTGTTGATATCTGGGTTACTGGACTGAATCCAGTCTTAAGTTGccaaataaatgtcaaacatAATGGAAGCACAGACGAAATGCATGAACTTAAGTTAACAGGATATGAAGTACTTACATAACTAGGCTGTGTGTTATTTGATCATTATCAGTCCTGCTCAATTTACTTAAGCATTCTCCCCTCCCAGCCTTCTGAGAATGATGCAACTGTACACTATACAAGTTAGACTATAACTCCTTATTCATTTTTGAGTAACTGCCAATGCACTCAGAAGGCAGATCGCAAAATACACATGGTAGGCCATGAACCaggtctctctgtctcacaatTATACGCCATCCTCTTGGCACAGAATGAGTTGGTACAAGTTGCTTTGAAAACTACTTTAATATGTTATTAACAACTCTTGAAGAAACTTGTGgctatgcaaatattttatttttaagatttcatttttCCTCCCTCTGCATAGAATAGTAATGTATGCTTTAAAGGTCAAATGAGTATCAAAtggaaaaagataaaaagaaatgtaagctTACATGTAATTTTCCACATGCTATTGTAACCCATGTTGTttttgcaacaaatggtgttCTAAATGCATTGGATTAATGAATACAGAATCACACTCAGAGGTGTAAACGGAATGACTTAATTTAATACCCTAGCCAGCACTATTACTCATAGCTACTCCAGAAGCCAAGCACAGTTGCTGGCTCACTGACATTGCAAACCAAAGAACTGTAAATAGATAATTTACTTATAGATTGTAGCTCCCAGGGTGGATATTGTTACTGGCATATCTCTAAATCCCTCAAACTCAGCTGCTGTGTTTTGCAATAAAGGGATACTAAGGACATCAGACAACTTGCATGTCAGTTTTAAAACTAGTTTCCACTAGGTAGAGATTtgacatttaataattacattctgGGGACAAAGGCAAGAAACATTCAGCCAATAGAAGTTTTGTTGCTGCTAAGGAAAATggtcaaaacatttttacatcCATCGGTAAATTATCAATTCCTTAAAACCAGGTAAAATGCTACATCAGATGTAGTTTTCCATTCAGCTCAAGCATGCATTGCAAAATTTGAGTGAAACCCTGAGGGCACCATATCTATCAAATATCAGAGTCACTAGTTTACAGAAAGAAGAGATGAGAGGTgatatttatccatttatttcaaagcattttcatGAATAAGAATAGTGAAGACACAGAGGAAGTAGCTTACTGCCTGGTTCAGATCAACAGTTGCTTTACATTGCAGTCATATTGCATTTCTCCAAGGCTACAAAATGCATTGTCATTTGCATTCATTTCTTTCGAAAAAGCTTGGCCAAATgggtacaaaaatgtaaaagataaaaaaaataaagcttggAACAACTTTTAATCTGTGTCTTCAGATCCATAAATAACAGTAACtgaacaaatacaatgaaattgtacattaacattcaaaacataaaaaagccaatGGCAGCAGTTTTATCTTCTATGAGAGTAACAGCTTCATTTCTTTGTGTCTGCAGTGTGTAAATGAGAGACAATGAAGAGCCCTACATAACTATTACTGCACGGAGTACAGACTATCAGAGCAGTTTCAACATTCTTACGTCGTAAAGTCTTACTtcactaaaaatacattataataggACAACAGAGAAAAGACAAAATTAGAGAAGAGTAAATTTCAGAGCAGATAGACATGAAAAGCAGCTGGTGTTGGTTTGTAGAGAGTATATCCTTACAGCTGGTGTACAGGCTGACCATCCATCCAAATTCAGGAATGACCAAATTGATCTCATTACAATCTTGTAGGCTTTGGAGTGTGGGGCCTCCTTGTCAGGAGAATAtgcaaaaacaatcaatatttcTTAAGATATCATTAAAGGAACATCTGTAACAGTAGTTACAGAGTTGTGATCTCATTACACATATAGGTATCATTAAACATTCAATCAGCGTTTACAAAAGGACAACTCATGTGCTTGTGTGGTGAAATGTCCTTttggctgtgttttttgttagtaACTGTGGTAGTCATTCTACAATGGAAGGATAAGGAAGACACTTAGATGTGAGGAAGTTCAAAGGGAAAAAATTAAGGcccacattttgttaaacacagAATACACGACGTGTTGAATGTAGAATGTAATGACAGCATGAACTCCCTGAAAGTTGTCCTGCTTTGGGACAGCCATGCTCCTGTACCATAGACAGGTTAGAAGTTTAATCTGTgtacaaaatacttttcataCTGAactcttttgtatattttactgaTTCGAACCTCTCATAAGTCTCCCATTTATTAACTACAATGGAACTGAACCACACTTGGTATACAAgtattcagtattttctttGGTGATTATTTTCAGATTACCTTTCTGCCTTTACTGGAGTCTGAAAATTTGCTTTAGCAATAAATTATGTATCTTTCTCCTGAATTAAACCATAGTGATTACAAGGCAACATGCTAGATACACACGGACAATCTTTCTCAAATGTGTTATGTGTTAAAATATTACACCATGGAAATCAATACCATGAAAACTGCATGAATTTGGAATTTGGAGGAACTAGCACATCACAAGAAGATAAAAATATCT

Function

GO:

id name namespace
GO:0005952 cAMP-dependent protein kinase complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75347 True 4101 lncRNA 0.36 1 6036565 6040665

Neighbor

gene id symbol gene type direction distance location
AMCG00019997 NA coding downstream 249109 5769073 ~ 5787456 (-)
AMCG00019995 NA coding downstream 326702 5688531 ~ 5709863 (-)
AMCG00019996 NA coding downstream 421109 5604443 ~ 5615456 (-)
AMCG00019994 rgs3a coding downstream 461879 5568518 ~ 5574686 (-)
AMCG00019990 NA coding downstream 655601 5375866 ~ 5380964 (-)
AMCG00020003 NA coding upstream 137591 6178256 ~ 6181661 (-)
AMCG00020005 NA coding upstream 145566 6186231 ~ 6200034 (-)
AMCG00020012 golga2 coding upstream 266868 6307533 ~ 6328630 (-)
AMCG00020013 NA coding upstream 288343 6329008 ~ 6333367 (-)
AMCG00020011 NA coding upstream 302122 6342787 ~ 6344692 (-)
G60231 NA non-coding downstream 40877 5995469 ~ 5995688 (-)
G60230 NA non-coding downstream 45381 5990945 ~ 5991184 (-)
G60179 NA non-coding downstream 512946 5471319 ~ 5523619 (-)
G60102 NA non-coding downstream 869275 5166359 ~ 5167290 (-)
G60101 NA non-coding downstream 871077 5165267 ~ 5165488 (-)
G60237 NA non-coding upstream 14884 6055549 ~ 6055822 (-)
G60252 NA non-coding upstream 38944 6079609 ~ 6079871 (-)
G60258 NA non-coding upstream 58780 6099445 ~ 6099911 (-)
G60262 NA non-coding upstream 70684 6111349 ~ 6114148 (-)
G60271 NA non-coding upstream 114253 6154918 ~ 6155224 (-)
AMCG00019992 NA other downstream 743892 5291590 ~ 5292673 (-)
AMCG00019993 NA other downstream 758274 5276662 ~ 5278291 (-)
G60118 NA other downstream 770640 5263914 ~ 5265925 (-)
AMCG00019976 fam102a,LOC105891604,LOC108430372,LOC103389177 other downstream 975053 5012444 ~ 5061512 (-)
G59806 NA other downstream 2556456 3479782 ~ 3480109 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other upstream 118912 6159577 ~ 6172474 (-)
AMCG00020017 arpc5l,arpc5la,LOC107571143,LOC107753090,LOC108411248 other upstream 409957 6450622 ~ 6461428 (-)
G60348 NA other upstream 422883 6463548 ~ 6466586 (-)
AMCG00020019 NA other upstream 426606 6467271 ~ 6471434 (-)
G60516 NA other upstream 1400138 7440803 ~ 7562592 (-)

Expression


Co-expression Network