G60348


Basic Information

Item Value
gene id G60348
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 6463548 ~ 6466586 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU75488
AAGTCatgtcactttttttatttcatataaattatGTACACTCATAAATGGGCCATGAAACGGGACTTTTTtccgatttttttttattcaatgcaaGAGAACAGCCTTATGCCTTGACGGCGAATTTGCGGATGGGGTACAGGCGCTCCTTCCTCTGCAGTTTCTTGGTCTTCAGGCTCTCTTCGTGCTTGTTCAGCCGTCTGCGCATGGCACGAGTCTTCTTGGGCCTCAGATCCAAAGGCTTGTACTTCTTGCCCTGTAGAACTTCCTCAGGTTCTCCTTCTGCGTCTGGTTAATGACAGTCAGAACTCTGGCGATGGACTTGCGAACAACACGATCTTGGAGAGTTTGGAAGCAGCTCCTCCGGTGACCTTGGCCACGCGGAGCTGGGACAGTTCCACCTTCAGGTCGTCCAGCTGCTTCAGCAGCTCTTCCTTCTTCTTGCCACGCAGATCTCGTGCCTTGATCTTTGCCTGAGCACAAAAACTTCAGTTAAAGTATCTCCTTCTGGACCACAAAGGTTGACTATATTCTGGATTCAGTAAACTGTGTACACCTTGAAAGCACCTGCAATGTCATTCCCAACACTTTCCATTGAAGAACTCAACCACACCATCACGAAATCTAAACTAAAATTAGGCCCAAGTCTTCAGGGCGGTTGATATACACATTTCCATTACTTCATTAACATTATGGGACATACTAAACTgcgtaggaaaaaaaaaaaatctagtctACAGGTAATCAAAGCTACCCGAGGCTCACTCGCACACAAACTGGAGAAGCAATTTAAATTGACATGCATGCTGTTCACACATGAAGTCCAGGCCACGCCATACAAAACCGTCTTTGAAATTCATTTTGGTTGGTCAAATTAAAACCATCACGAAAGGCCTCAACCTGCACATGCAGCACTACCGGCGCATCTCGATGCATTACATGACAACAGGACCGGGGCTGTATAATATCCCACTTAATTCACAGAACATCGTCAGATCATTCatgttatttgtatgtttcataGAAATGGTGCGACTTTAGGATTAACGCTCAACGTGGTAGGCCTTCCAGACCCTAGCCGAAAGATGCAAGTTAAACCCCACACTGAAAACAACTATGAACAGCTCTGCGTGTGCATCAGGTCATCTGTACTTACTGGGCCCAccgattaaaaaaattaaaaagatagcGGAACATCTTGTGAAAGTAAGTGCATATTCATCGAAATCAAGCATATCGTGAAACAAAACAATCgggcatttttatttcagaatatgCCAGACATAAAACGTTAATAGGGATCCACATTACACGCGTAAAAAATAAACGGCAGCCATATCAGCCAAGGATGCCCGGCGAGATCCGACATGGGTCAATATGCTAAGCTTTTCACAGTAAAATGGACTTTTCACTCGTTTAATACTTAATCGTTCGTACAGATATGATGTTAAGGTAGGATTGTATGGGGTTGGATTACAATACAGGGTCTACAATCGCAAGGATTGCAGGAGATTCAACCCAGAGAAGTAAAAACTCTCACCATTGTCAGTGCTGGCCGCCACAGGAAAGGGAATGCGCAGGTCACAGGCGAGCTCTACCGGGTTACGGGCGAAACCAACTGCCTTCACCGCACTGAGAGGGGGGTCGGACTGGTCCATCGGTAGGTGCGCTTTTAACGTGTTAAGCGAGCGTTGattaaaat
>TU75489
AAGTCatgtcactttttttatttcatataaattatGTACACTCATAAATGGGCCATGAAACGGGACTTTTTtccgatttttttttattcaatgcaaGAGAACAGCCTTATGCCTTGACGGCGAATTTGCGGATGGGGTACAGGCGCTCCTTCCTCTGCAGTTTCTTGGTCTTCAGGCTCTCTTCGTGCTTGTTCAGCCGTCTGCGCATGGCACGAGTCTTCTTGGGCCTCAGATCCAAAGGCTTGTACTTCTTGCTTGTAGAACTTCCTCAGGTTCTCCTTCTGCGTCTGGTTAATGACAGTCAGAACTCTGGCGATGGACTTGCGAACAACACGGCTACAAAAGAAGGTAAGATCACTAACCTGTCCATTTCAAATTCATATCTATCCCCCAAAAAAGGaccacttaaataaataaataaaaataaatccacaactGAAGAGGTAAACCCAGGCCATTTCTAATATCGCCTCCCCTATGGTAGAATCTGCCATGTTCTCCAACCCCACCACCAGTGACAGTGGAAGCTCAAGGCAGACCGCTGAACTAGTGAGGTCTGCTCATTGATGTCCACGATGAGAACTTACATCTTGGAGAGTTTGGAAGCAGCTCCTCCGGTGACCTTGGCCACGCGGAGCTGGGACAGTTCCACCTTCAGGTCGTCCAGCTGCTTCAGCAGCTCTTCCTTCTTCTTGCCACGCAGATCTCGTGCCTTGATCTTTGCCTGAGCACAAAAACTTCAGTTAAAGTATCTCCTTCTGGACCACAAAGGTTGACTATATTCTGGATTCAGTAAACTGTGTACACCTTGAAAGCACCTGCAATGTCATTCCCAACACTTTCCATTGAAGAACTCAACCACACCATCACGAAATCTAAACTAAAATTAGGCCCAAGTCTTCAGGGCGGTTGATATACACATTTCCATTACTTCATTAACATTATGGGACATACTAAACTgcgtaggaaaaaaaaaaaatctagtctACAGGTAATCAAAGCTACCCGAGGCTCACTCGCACACAAACTGGAGAAGCAATTTAAATTGACATGCATGCTGTTCACACATGAAGTCCAGGCCACGCCATACAAAACCGTCTTTGAAATTCATTTTGGTTGGTCAAATTAAAACCATCACGAAAGGCCTCAACCTGCACATGCAGCACTACCGGCGCATCTCGATGCATTACATGACAACAGGACCGGGGCTGTATAATATCCCACTTAATTCACAGAACATCGTCAGATCATTCatgttatttgtatgtttcataGAAATGGTGCGACTTTAGGATTAACGCTCAACGTGGTAGGCCTTCCAGACCCTAGCCGAAAGATGCAAGTTAAACCCCACACTGAAAACAACTATGAACAGCTCTGCGTGTGCATCAGGTCATCTGTACTTACTGGGCCCAccgattaaaaaaattaaaaagatagcGGAACATCTTGTGAAAGTAAGTGCATATTCATCGAAATCAAGCATATCGTGAAACAAAACAATCgggcatttttatttcagaatatgCCAGACATAAAACGTTAATAGGGATCCACATTACACGCGTAAAAAATAAACGGCAGCCATATCAGCCAAGGATGCCCGGCGAGATCCGACATGGGTCAATATGCTAAGCTTTTCACAGTAAAATGGACTTTTCACTCGTTTAATACTTAATCGTTCGTACAGATATGATGTTAAGGTAGGATTGTATGGGGTTGGATTACAATACAGGGTCTACAATCGCAAGGATTGCAGGAGATTCAACCCAGAGAAGTAAAAACTCTCACCATTGTCAGTGCTGGCCGCCACAGGAAAGGGAATGCGCAGGTCACAGGCGAGCTCTACCGGGTTACGGGCGAAACCAACTGCCTTCACCGCACTGAGAGGGGGGTCGGACTGGTCCATCGGTAGGTGCGCTTTTAACGTGTTAAGCGAGCGTTGattaaaat
>TU75491
AAGTCatgtcactttttttatttcatataaattatGTACACTCATAAATGGGCCATGAAACGGGACTTTTTtccgatttttttttattcaatgcaaGAGAACAGCCTTATGCCTTGACGGCGAATTTGCGGATGGGGTACAGGCGCTCCTTCCTCTGCAGTTTCTTGGTCTTCAGGCTCTCTTCGTGCTTGTTCAGCCGTCTGCGCATGGCACGAGTCTTCTTGGGCCTCAGATCCAAAGGCTTGTACTTCTTGCCCTGAAATAAAGAGTATTTGCCTGTCAATTAAACGTTTCTCATTCATTTGaggattttcagttttcaacaAGTCTTGTCAACTGTTTACTGGAGCCGGTCTTAACTGGAAAGTgtcaaatgtaagcaattaTTCTGCGATTTATATGCAGCTTACATAAATCCTACAGAAGCAGATTTGTCTTTCAAGAGTGCAGTTGCGTTAACACTTAAAACCACATTGttcaaatacacatttgatAAATCAGATTTAAGGCTGTAGAACAGCAAGATAAATTTTATATCAGCATTATCCATGACTGCATTTTCGATATTGCTTAATATTTTGCACATATTACTACCTTTTTTTGAgaaggggggggagagagagataccaAGAGTCAACTTCCTAATTATTTGAATCTTATAACTCCAAGTTGAAGTAGAATAAAAAATATCccatacatttcagtttagaGTAACTATCAATTTCATTAGCACACAGTTAATCAGTGCTGGCTGTatgcagtttcatttttgttacCATGCACATTATAGGTTCAAACATACACGATCTTCTGTCAAACACTTAGGACATTTTCCTAGTCACGTGTTTCAGACTAGAGCTGTACCTCCTTAGCAGCATGTAAAACCAGACAGACTGGCCAACAAGGGTGCTCAGGAGTGTGTGTTTTAGCAAGAACTGATTCACACTGCATCTATCAGCATGGAGAGCAGTGCTGGGTGATTGTCTTGCAGAAGCCCTTTCAAATGAGTGGTCACATACAGTCTAAACAGATCGTATCAAACGATCCCATCACTCTCACTGGAGATCAAGAGTGCACAGTGGCTGAGCAGTTGACTCCTAACAGGGACACTGTTGCTAGTTGTGGAAAGGACAAGCTTAGGAAGGAGTATTTTTGCAGTACACAACCAAAAACTGGCCAAAGGACTAGTTGtataaacaaaaccacaaagaataaaataaaaataaacatcccgAAACTCAAAAGCAACCCCATACAAGCATCAAGATCTACAGGTATGACAaggttttgaataatttaagacCCCAATTTAAGACACCAAGCAAAATAACAGCACTCACCTTGTAGAACTTCCTCAGGTTCTCCTTCTGCGTCTGGTTAATGACAGTCAGAACTCTGGCGATGGACTTGCGAAATCTTGGAGAGTTTGGAAGCAGCTCCTCCGGTGACCTTGGCCACGCGGAGCTGGGACAGTTCCACCTTCAGGTCGTCCAGCTGCTTCAGCAGCTCTTCCTTCTTCTTGCCACGCAGATCTCGTGCCTTGATCTTTGCCTGAGCACAAAAACTTCAGTTAAAGTATCTCCTTCTGGACCACAAAGGTTGACTATATTCTGGATTCAGTAAACTGTGTACACCTTGAAAGCACCTGCAATGTCATTCCCAACACTTTCCATTGAAGAACTCAACCACACCATCACGAAATCTAAACTAAAATTAGGCCCAAGTCTTCAGGGCGGTTGATATACACATTTCCATTACTTCATTAACATTATGGGACATACTAAACTgcgtaggaaaaaaaaaaaatctagtctACAGGTAATCAAAGCTACCCGAGGCTCACTCGCACACAAACTGGAGAAGCAATTTAAATTGACATGCATGCTGTTCACACATGAAGTCCAGGCCACGCCATACAAAACCGTCTTTGAAATTCATTTTGGTTGGTCAAATTAAAACCATCACGAAAGGCCTCAACCTGCACATGCAGCACTACCGGCGCATCTCGATGCATTACATGACAACAGGACCGGGGCTGTATAATATCCCACTTAATTCACAGAACATCGTCAGATCATTCatgttatttgtatgtttcataGAAATGGTGCGACTTTAGGATTAACGCTCAACGTGGTAGGCCTTCCAGACCCTAGCCGAAAGATGCAAGTTAAACCCCACACTGAAAACAACTATGAACAGCTCTGCGTGTGCATCAGGTCATCTGTACTTACTGGGCCCAccgattaaaaaaattaaaaagatagcGGAACATCTTGTGAAAGTAAGTGCATATTCATCGAAATCAAGCATATCGTGAAACAAAACAATCgggcatttttatttcagaatatgCCAGACATAAAACGTTAATAGGGATCCACATTACACGCGTAAAAAATAAACGGCAGCCATATCAGCCAAGGATGCCCGGCGAGATCCGACATGGGTCAATATGCTAAGCTTTTCACAGTAAAATGGACTTTTCACTCGTTTAATACTTAATCGTTCGTACAGATATGATGTTAAGGTAGGATTGTATGGGGTTGGATTACAATACAGGGTCTACAATCGCAAGGATTGCAGGAGATTCAACCCAGAGAAGTAAAAACTCTCACCATTGTCAGTGCTGGCCGCCACAGGAAAGGGAATGCGCAGGTCACAGGCGAGCTCTACCGGGTTACGGGCGAAACCAACTGCCTTCACCGCACTGAGAGGGGGGTCGGACTGGTCCATCGGTAGGTGCGCTTTTAACGTGTTAAGCGAGCGTTGattaaaat
>TU75492
AAGTCatgtcactttttttatttcatataaattatGTACACTCATAAATGGGCCATGAAACGGGACTTTTTtccgatttttttttattcaatgcaaGAGAACAGCCTTATGCCTTGACGGCGAATTTGCGGATGGGGTACAGGCGCTCCTTCCTCTGCAGTTTCTTGGTCTTCAGGCTCTCTTCGTGCTTGTTCAGCCGTCTGCGCATGGCACGAGTCTTCTTGGGCCTCAGATCCAAAGGCTTGTACTTCTTGCCCTGAACTTGTAGAACTTCCTCAGGTTCTCCTTCTGCGTCTGGTTAATGACAGTCAGAACTCTGGCGATGGACTTGCGAACAACACGGCTACAAAAGAAGGTAAGATCACTAACCTGTCCATTTCAAATTCATATCTATCCCCCAAAAAAGGaccacttaaataaataaataaaaataaatccacaactGAAGAGGTAAACCCAGGCCATTTCTAATATCGCCTCCCCTATGGTAGAATCTGCCATGTTCTCCAACCCCACCACCAGTGACAGTGGAAGCTCAAGGCAGACCGCTGAACTAGTGAGGTCTGCTCATTGATGTCCACGATGAGAACTTACATCTTGGAGAGTTTGGAAGCAGCTCCTCCGGTGACCTTGGCCACGCGGAGCTGGGACAGTTCCACCTTCAGGTCGTCCAGCTGCTTCAGCAGCTCTTCCTTCTTCTTGCCACGCAGATCTCGTGCCTTGATCTTTGCATTGTCAGTGCTGGCCGCCACAGGAAAGGGAATGCGCAGGTCACAGGCGAGCTCTACCGGGTTACGGGCGAAACCAACTGCCTTCACCGCACTGAGAGGGGGGTCGGACTGGTCCATCGGTAGGTGCGCTTTTAACGTGTTAAGCGAGCGTTGattaaaat

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0009987 cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0019843 rRNA binding molecular_function

KEGG:

id description
ko03010 Ribosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU75488 False 1702 lncRNA 0.45 3 6463548 6466586
TU75489 False 1953 TUCP 0.44 2 6463548 6466586
TU75491 True 2780 lncRNA 0.42 2 6463548 6466586
TU75492 False 892 TUCP 0.49 3 6463548 6466586

Neighbor

gene id symbol gene type direction distance location
AMCG00020011 NA coding downstream 118856 6342787 ~ 6344692 (-)
AMCG00020013 NA coding downstream 130181 6329008 ~ 6333367 (-)
AMCG00020012 golga2 coding downstream 134918 6307533 ~ 6328630 (-)
AMCG00020005 NA coding downstream 263514 6186231 ~ 6200034 (-)
AMCG00020003 NA coding downstream 281887 6178256 ~ 6181661 (-)
AMCG00020018 olm2a,olfml2a,LOC104951789,LOC107554414 coding upstream 102469 6569055 ~ 6591103 (-)
AMCG00020024 NA coding upstream 402987 6869573 ~ 6896989 (-)
AMCG00020025 NA coding upstream 432298 6898884 ~ 6923473 (-)
AMCG00020026 NA coding upstream 519950 6986536 ~ 7008056 (-)
AMCG00020027 lhx2,lhx2b coding upstream 646227 7112813 ~ 7126623 (-)
G60345 NA non-coding downstream 18815 6443275 ~ 6444733 (-)
G60317 NA non-coding downstream 104609 6300656 ~ 6358939 (-)
G60311 NA non-coding downstream 187516 6274269 ~ 6276032 (-)
G60271 NA non-coding downstream 308324 6154918 ~ 6155224 (-)
G60262 NA non-coding downstream 349400 6111349 ~ 6114148 (-)
G60356 NA non-coding upstream 20723 6487309 ~ 6489377 (-)
G60377 NA non-coding upstream 212592 6679178 ~ 6695776 (-)
G60387 NA non-coding upstream 331323 6797909 ~ 6800750 (-)
G60540 NA non-coding upstream 1106011 7572597 ~ 7572831 (-)
G60610 NA non-coding upstream 1386415 7853001 ~ 7854373 (-)
AMCG00020017 arpc5l,arpc5la,LOC107571143,LOC107753090,LOC108411248 other downstream 2120 6450622 ~ 6461428 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other downstream 291074 6159577 ~ 6172474 (-)
AMCG00019992 NA other downstream 1170875 5291590 ~ 5292673 (-)
AMCG00019993 NA other downstream 1185257 5276662 ~ 5278291 (-)
G60118 NA other downstream 1197623 5263914 ~ 5265925 (-)
AMCG00020019 NA other upstream 685 6467271 ~ 6471434 (-)
G60516 NA other upstream 974217 7440803 ~ 7562592 (-)
AMCG00020066 fam69b,fa69b other upstream 2346199 8812785 ~ 8828109 (-)
G60746 NA other upstream 2372625 8839211 ~ 8839945 (-)
G61170 NA other upstream 4288882 10755468 ~ 10756419 (-)

Expression


Co-expression Network