G60656


Basic Information

Item Value
gene id G60656
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 8044609 ~ 8047241 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU75879
cAGGTCGTACCAACAGACGTTGCACAGCACTAAGCCCCCTCTATTCTCTTCTACTTCAGAGTCTTTGAATCGCTGAGGCAGCTCTTTAGTCATGTTTggtgatgtaaaataaattactttcttTCAAAACTGATTGTTAATATAGGAAATTCAGATGTAATGcgccaattattattttttcttggcaaATGCCAGTGATAACTTAGTAGTTAGCAAAGACACTGCAGAAAAGTAGTCACCATAAGGCTCATTATCACATAATTATGATTcagaaaagtataaatattCTGGAGGCAATGCTAATAACGCATGGAACACATGGAATACAATATCTCACTGTACAAACCCTTGGAATGTATACAGAAATGCTTTTAGTGTAAaactcaatttattttgttcacactttttgaatatattgtgTGACTACAACAAGGTTTAACAGCAGCCAACaattcattttgacattttattaaagtagAACTTTGcaatatagtgttaaaatggcttaaacatttgcttttaatacttataaataataaacctgtgtaacaaactacatttacaaaatgtgatttttcaaaAGTTTTTAACATTCAAACCACTACTGTCTTTCAGTCATTCCACCTAGTTTGAAATGCATGTAATACTGTTTCTCTTGGTTAGAGAGAAGGTAGTGAGGTTCTGAAAATTATTTTGTCCACATTCATGAACTGGTAACCTATGGTGTCATAGGGGAGAGAAACGCTACAAGGCTTTTTCAATTTGTCAGTTTTAGATCATCCTTCTGGATTGGGTCATCAGGTACActctcaaaaataaatgactttgtatttttacttcTAACAAAACATTGACTTGCATATTACAATGAATtactatttacttttcattactgcAAATGTACTTGGATGTACTTGCTCTATCAGGATTGCTTGAAGAAACTGGATTACTTGAATTTATCAggtattaaatacaattaattgtgggcattgtttttttaagtaacttcACTTATTAAAccaagtatttgttttgtttactgtacatcaaaatatttacattttacattactagGAATTGCTAGAAAATATTACACTAAGaattatttgtaaaattgaCAAGTTTTTTATACTGGTACAGagtaattttatttatcaatttaataacatttgtttgtttgttttttgtgtagaGTGAAGGGACTATAACAGTATTGGGAGATTAAAAAAGCGAGTCAGACTGACTGCAAGCCCTTCCCTCTGAGAAACGATATTATCTATAGAAACCAAACCCCACTATTTGCTCTTCAACATCAGCACTTGATGTTCTGTTGAAAGATTTTGGAAAAATCTtaatgctgaaataaattatattttctcttgTAAGGAAACTAAAATGCAGTCTATAACtcccatttaattaaatatataacaccaaaacaatccaaaacatctagaatttaaatacaataaacctATGATTCTGTGgtcatatttgtataattaagcttgtgaatgaaatgtttattttcaggcaTGACAACTATCTTTCTTAGCATTTGCATCCTTGAAGCCAGCATTGTGGGATGTGTCCCCATCACATTACTGAGCAGATCCTCGATTGCCCCGTGTCACTGGGGGCATCCAGCTTGGTTTTATCCTTAATCAAGATTGCCTGGTTCCCATACCGAGTATACCAGGTGCTCTGACTTCGGCTGAGATAGGTACTGGGCGGTGCCCGCTCCATttcttgttgctgttgctgccaGATGAGCAGTGAGGTGTCTTGGTACCTCAGTCTTGCATATCCCTCTGAAAGGGCTTTTTCTGCCAATGGCACTCTGCCACTCATGTTACTGCACTTCCATCCTCTCAGTCTCTGTCAATGGTCTTCAGTCATTGAAATGACGCTGGACCCCCAACTCGCTCAGTGTTGGATTTGTCCTCTTGAATGGTTCATAAAAAGGTTAGTCACCTTTCTTGactaatttcctttttcttgtgTGGTGCAAAATCAGTTCAgtgccattttatttctgtatctaTAGCCAAACCCAAATTCATCCTCTGCCCTAAAATAGGATACAATATGCtacctgtttgtttttacataacaAGGATCATCTTCATTTAAAGCCCCAAATCCAAGGAGCTGTATGATATCCAACTGTTTTCTGATGCAGATACCACCTCCAGGTTGATCGCGGGAGCAATATGCATTTCATGCTGTATCTTTGTCAGCAGGAGACTTCAATATGAACAGCACAATTcaattgaagaaaataactatacAGAACCGCCTGGGTCAGGTCCTGCACTGAAACACCCAGCAGGCGTTAACAAAGAGACGATAACTTTccaaatgattattattgttgagaGACATGTCAATAAACATGATCCAAAGTGGTCGCTATCTTCCGTCGTGGCAACGAGTATAATCTTGCGACGATGACAGATCTGATAATCCGATTTGTTTTCATCGTGTCTTTACTGTTCCGAATAAGAGTACGAATTGTTTCCCCCCTGCCGGGTCATATATTTAATCCACACAGAAACTGCACCGCTTTGCTGCGTCCATTGCTGTGTCTCAGCTGTGCTTCGCCCTGGTTTTCGATCATGTCTGTAACAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75879 True 2633 lncRNA 0.36 1 8044609 8047241

Neighbor

gene id symbol gene type direction distance location
AMCG00020054 vav2 coding downstream 116742 7881820 ~ 7927867 (-)
AMCG00020050 lrrc8a,LOC104923672 coding downstream 234203 7799922 ~ 7810406 (-)
AMCG00020051 NA coding downstream 246670 7792298 ~ 7797939 (-)
AMCG00020043 nup188,LOC102792001 coding downstream 258617 7766925 ~ 7785992 (-)
AMCG00020038 NA coding downstream 475004 7537932 ~ 7569605 (-)
AMCG00020055 NA coding upstream 6578 8053819 ~ 8071930 (-)
AMCG00020057 rxra coding upstream 43064 8090305 ~ 8116036 (-)
AMCG00020058 NA coding upstream 86940 8134181 ~ 8134951 (-)
AMCG00020062 NA coding upstream 255022 8302263 ~ 8305952 (-)
AMCG00020061 NA coding upstream 266572 8313813 ~ 8326375 (-)
G60610 NA non-coding downstream 190236 7853001 ~ 7854373 (-)
G60540 NA non-coding downstream 471778 7572597 ~ 7572831 (-)
G60387 NA non-coding downstream 1243859 6797909 ~ 6800750 (-)
G60377 NA non-coding downstream 1348833 6679178 ~ 6695776 (-)
G60356 NA non-coding downstream 1555232 6487309 ~ 6489377 (-)
G60723 NA non-coding upstream 746727 8793968 ~ 8796315 (-)
G60725 NA non-coding upstream 751723 8798964 ~ 8799167 (-)
G60730 NA non-coding upstream 759779 8807020 ~ 8809893 (-)
G60774 NA non-coding upstream 933032 8980273 ~ 9017406 (-)
G60833 NA non-coding upstream 1110686 9157927 ~ 9160733 (-)
G60516 NA other downstream 482017 7440803 ~ 7562592 (-)
AMCG00020019 NA other downstream 1573175 6467271 ~ 6471434 (-)
G60348 NA other downstream 1578023 6463548 ~ 6466586 (-)
AMCG00020017 arpc5l,arpc5la,LOC107571143,LOC107753090,LOC108411248 other downstream 1583181 6450622 ~ 6461428 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other downstream 1872135 6159577 ~ 6172474 (-)
AMCG00020066 fam69b,fa69b other upstream 765544 8812785 ~ 8828109 (-)
G60746 NA other upstream 791970 8839211 ~ 8839945 (-)
G61170 NA other upstream 2708227 10755468 ~ 10756419 (-)
G61269 NA other upstream 3648450 11695691 ~ 11701645 (-)
AMCG00020159 NA other upstream 3954459 12001700 ~ 12052211 (-)

Expression


Co-expression Network