G60730


Basic Information

Item Value
gene id G60730
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 8807020 ~ 8809893 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU75971
TGCACCATGGTGTTCGGACTAGAGCTTTCAttagtttgtaaaataaaaacaaaaggaccaatctttaaaaggttttattaaattgacAAATCCAAAGCCCAACATTTATCAAACTTCTCCTCACAGATCACAAATTGGGGAGTCAGATGACATGTGCATGCTGTCCCAACAGACTGCATTCAAGCTCTCCAGGCGTGATGTTGCTGCGCCTTCACCTGTAATaaagaaaccattaaaaatTGTTTCCCCACAGCCTTCCCCCGAAAGGTTTTCCCATTTTACAGTGGATTCTCAATTCAGTTTAATAGGGACCCAAGAATGAATCCTCGGTTTTGTCCTGCTCCTAAAATCCATGACAAGCACCAACAGATCCAACAAACATGGTTGGGATCTGCCCATCTCAATACAGCTGAACTGAACAGTTACCAGACTATCCAGTTTAGCTGCAGAAGCCTGAACACAGCTTCATTAAAAGGAAGTTGCAGAAATAACACCAGGATGTCCGTGTACAAGACCTCCAAAATCAGCAAGTCCTCCAGCAGCACACTGCTTAGCTAGGCAAAGGGAAGGCTGGCTCTTGCATTAACACTACATTTTGAATTATCACATTGTCGGGCTATTAATCATTCTTGTGCCCACTTTTTCGAGACACTGAATGCAGACTGTGGCCCATTCCTCTGCGCCACCTAATGACACAAACACGACACCTGCAGTCGTGCTGCAACGCCTCTAGGGGCAGGCAAGCAGAGTTATACCAAGTATTACAAATCCAGTGTGGCAGGTTTCCACAGCAAGAAATGCAGCCTACTCACCAATTCCAAACCGAATTCCATTGCATCCTATCCAGTCCTTAGCCACTATCAACTGCTCTGCAATTTTCAAAGAAACAATGTTAATGGCATGAAGGAGAAATGAGGCAATCTATAAAAATTCATAGATATTACTCCATGCATAACCACAGAACTGTTCCAGAAGCCTGCCACAAACTATGCATCTATCTGGCCACGTACCATCCCCAGAGCTCAGTCTAGAGCACTGAGGCAATTGATGGCCAGTTTCTGTTTGCCCTCTTATGGCATAACCACAGTATTCAACCATGATCACATCTCATGGGGCAAGTTTCACTACAGCAGTGATGTAGCAAGTTTAACCCTGGTAGTTTAGCAGTTAAAAAGCCCACATGCACAAACTTACTTCAGGGTTCCCACTCAAGACATGCCATAGCTGCTACACATTCTTCTGAAAGGCTACTCCAAGATTGTAAAAAACCTTCATTCTGGTTAAGTTGATCCCCCTCAGCTTGGTTCCAGTTCTATAAATAGCCATTCAACCTAGAGAGAAAAGTCTACATTTACATCTTGAACTAGATCAGGTTTAAAGAATCCTAACCGTGCAGACACTGCAGGAAAGCTATAAGCCAATTTTAGTCCAACCAACACACGACCACTACAGGCGTTTGGAAGTTTGAAACCCCATACAGGACTTTTACAAGACGCACATTTACAGCGTAACCCTGGCTGTTACAAGTATAATTGTTCTGCAGTTACTAGTTTTATGCACAAACTGAATCAAGTTTACCTGCAAGACCGCACCCCTTAGTCCGGAGAGGATGCACATGGCGTGACGAGGCGCTGAGCTGCAGGAACAAGAGGGAAGATTAGCTCATGCATGAGGCACAGGACCATCTGTCGGGCCAATCATCATCCGCAGCCCCCATTAGTGCGGGGGCCCGATCGCAGACACAGCCCGTCTCTCTCCGCCGCCTAATGACGCATGCGCGGCACAAGCAGCCGCGATGCAACGCCTCTAGGGGCGGAGCTGTCCCTCCCCACGTGGTGAAGGAACACCAAACGCGTTAAATTACCTcaaatttatttcacattatgcAACTAAGGGTCGATATTTTTGTTAGAGACCACAATGCAATTCATTACAAATCTAAATTAATGGATTTGGGGAAACAATGTATACAGTTGGAGGGCTTGTCCAATACTGCCATGCACTACGCATGTACTAACCCATTTAATAGGACAGTGAAAATGCGCACCCTAATGAAAGATTAAATGTCACAGGTAAAAACTGATACATTAAGAAATATGAGTTAGTGCACATCATTGCAAGTAAAATCGAACTATATTATACTTACAGGTCACCTTCAATTAACATATCTGACGTAGACATaggatataaaaatgtattttttatgttgtagCAAAATTACTTATCCAGAAATAAACTAACTTAAAATTACACATCTGATATGAGATTatactatgcatttatttgtacgACAGAATTGCAACGTTAGGCTAGAAAGCACTACCAACCTGCACACGCCTCTCCCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75971 True 2346 lncRNA 0.43 2 8807020 8809893

Neighbor

gene id symbol gene type direction distance location
AMCG00020061 NA coding downstream 480645 8313813 ~ 8326375 (-)
AMCG00020062 NA coding downstream 501068 8302263 ~ 8305952 (-)
AMCG00020058 NA coding downstream 672069 8134181 ~ 8134951 (-)
AMCG00020057 rxra coding downstream 690984 8090305 ~ 8116036 (-)
AMCG00020055 NA coding downstream 735090 8053819 ~ 8071930 (-)
AMCG00020067 NA coding upstream 44923 8854816 ~ 8876263 (-)
AMCG00020081 NA coding upstream 154668 8964561 ~ 8966030 (-)
AMCG00020078 fnbp1 coding upstream 211930 9021823 ~ 9049768 (-)
AMCG00020077 NA coding upstream 267847 9077740 ~ 9083125 (-)
AMCG00020082 NA coding upstream 305580 9115473 ~ 9127068 (-)
G60725 NA non-coding downstream 7853 8798964 ~ 8799167 (-)
G60723 NA non-coding downstream 10705 8793968 ~ 8796315 (-)
G60656 NA non-coding downstream 759779 8044609 ~ 8047241 (-)
G60610 NA non-coding downstream 952647 7853001 ~ 7854373 (-)
G60540 NA non-coding downstream 1234189 7572597 ~ 7572831 (-)
G60774 NA non-coding upstream 170380 8980273 ~ 9017406 (-)
G60833 NA non-coding upstream 348034 9157927 ~ 9160733 (-)
G60839 NA non-coding upstream 459667 9269560 ~ 9303247 (-)
G60993 NA non-coding upstream 1118084 9927977 ~ 9928866 (-)
G61027 NA non-coding upstream 1276020 10085913 ~ 10091086 (-)
G60516 NA other downstream 1244428 7440803 ~ 7562592 (-)
AMCG00020019 NA other downstream 2335586 6467271 ~ 6471434 (-)
G60348 NA other downstream 2340434 6463548 ~ 6466586 (-)
AMCG00020017 arpc5l,arpc5la,LOC107571143,LOC107753090,LOC108411248 other downstream 2345592 6450622 ~ 6461428 (-)
AMCG00020002 edf1,LOC106563255,LOC105015108,LOC100194632 other downstream 2634546 6159577 ~ 6172474 (-)
AMCG00020066 fam69b,fa69b other upstream 2892 8812785 ~ 8828109 (-)
G60746 NA other upstream 29318 8839211 ~ 8839945 (-)
G61170 NA other upstream 1945575 10755468 ~ 10756419 (-)
G61269 NA other upstream 2885798 11695691 ~ 11701645 (-)
AMCG00020159 NA other upstream 3191807 12001700 ~ 12052211 (-)

Expression


Co-expression Network