G60839


Basic Information

Item Value
gene id G60839
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 9269560 ~ 9303247 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU76105
CATCTTTTATTGTATCAAGAAACAATTGTTTACAAATcagttaacagaaaatacatttttttttgcaaactaCAACTTTGCAGGTAGGTAACTTTTTATTATgacagacattacatttttttcctttgtaaacTATGGTCTAGTTTATAAAACATGACAGTAAGAACCGACACCAATCCGATGCCCTTTAGAAAGCATTAGAGATGTCACAACACCACACCAGACAGGGACACTACAGAAGTTCTCTCCTCGTTAAAAATGCCGAGTTCATACATCGTACCCTAATCCCGAAGGATACAGAGTGGATTATCTTGTATTACGGCCCaagtcaataaataatgatttataaagcctcaatatttctgttttttgttttcctctgtagGGCCCTCAAGAGGATCccatttatttcatacatatacatttccatatattttttatatttaactctAGCAAACATACATGTCTGTATGATTTTAGAACAAAAATCCCTCCACACATTGTGACATCTCTAAGTGACACGACATGCTTAAGTCGTAagatttctgaaacaaaatccTCCTTACATTAAAGACAAACACcttatttacacatttcaaatatctGCCACAGGCTTATTATTTCGAACACTTTACTACTGTCACTGAAACCTTCTGAAAATTGCATGAAGGAAGAGGAAAGAATAACCCCTCCTTCCTTCCACAACTAAAAGATTCTGGCCACATTACCGTTTCTGAAAGAAACGACATACGGGATTGGATGTAGGGAAACTAAGAACTGTGGAATCTTTGTGTAGATTCTCACAGCAAGTTTAATTAACCccatcttctttctttttcaccaCCCCACATAGACTGACAATTCAGTTCAATCTGGCTGGTAAACCGAGCAACTCGTTGGTGTGCCGTTGCTGTTGGTTCAGACAGAACGTGCTTTTGCTCTCTTACATTTGAGAGAAACCCCTGTAACGTACAATCACAAACGCAAAAGTTTTTCAAACTGCCTTGCACCTTTTTTGggcaaaacaacattttccttTCTCCCCTATGCTCTCAGATTCAACCTGTGGAATTTGGCTTTACTACAGTTTGGACATAAATATAATTCTTCCATAGACTataattccaaaaataaatacgaTAAGTATAATTTTAATTGGAGTTATTTTACGAATTGTAGTGGCAATTACCTGGAGGACAAGGACAGTCTTCCGGGATACAGATATCTTAAGACATATTTGAATTccaattagttttttttggtACATACAACACTGTTAAGCAGCACTGATGTATGCAAAGTTAGCTTATGGATCCTGGTAAGGTAAGAcccttatttaaacaaaaaattgcAATGgtcctgcattaaaaaaattgtgttttcaaagaaaaaaagaaaataaaaaaatctaatttctgtTAAGAGACAAATATACATCTACATAATACTGAAACTTTAAACAAAGATTCAAAAATTTGTTCTATAAAATGgttctaaaagaaaaaacattcataagcactttacagattatacagtagaataataataaaaaaaaactggtgtacattcaaattaataaagtaaCATTAAGACACCAATAAATACCCAGTGTTTACATTAATCACAGCTCTTTACTTATATGGCAGACAAAagcatttacataaaataagccAAGCTAGATTTTCTCTACAAAAGCTACATCCGTTTATTTTCCTCCTAAGATGTAACCGATGGTCTGATTCTTACACCCACAGGAATTTAACAggcaacaataaaaacataaataacaaggCAGTGTTTCTTTGTtccatgtaaaataaacagtacataaataaatacaaaaatgaatagaaCATAATTCTTTCCTCGTTAGTATAAAACCATATAAAAAGGATCCTTcagtcaaaagttttttttttcctaatatttttttttgtttttttttttttttttt

Function

GO:

id name namespace
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function
GO:0015081 sodium ion transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU76105 True 1954 lncRNA 0.33 2 9269560 9303247

Neighbor

gene id symbol gene type direction distance location
AMCG00020084 NA coding downstream 76100 9169552 ~ 9193460 (-)
AMCG00020079 inpp5e,LOC105889666 coding downstream 102493 9162006 ~ 9167067 (-)
AMCG00020083 NA coding downstream 121249 9145242 ~ 9148311 (-)
AMCG00020080 cacfd1,LOC102799429,LOC106562965 coding downstream 124475 9137733 ~ 9145085 (-)
AMCG00020082 NA coding downstream 142492 9115473 ~ 9127068 (-)
AMCG00020087 NA coding upstream 4662 9307909 ~ 9327357 (-)
AMCG00020088 LOC102213968 coding upstream 97405 9400652 ~ 9444244 (-)
AMCG00020093 NA coding upstream 201139 9504386 ~ 9510745 (-)
AMCG00020094 NA coding upstream 239101 9542348 ~ 9547581 (-)
AMCG00020096 LOC103397832,LOC103359842,LOC101161976,LOC104923669,LOC104962502 coding upstream 429736 9732983 ~ 9738219 (-)
G60833 NA non-coding downstream 108827 9157927 ~ 9160733 (-)
G60774 NA non-coding downstream 252154 8980273 ~ 9017406 (-)
G60730 NA non-coding downstream 459667 8807020 ~ 8809893 (-)
G60725 NA non-coding downstream 470393 8798964 ~ 8799167 (-)
G60723 NA non-coding downstream 473245 8793968 ~ 8796315 (-)
G60993 NA non-coding upstream 624730 9927977 ~ 9928866 (-)
G61027 NA non-coding upstream 782666 10085913 ~ 10091086 (-)
G61052 NA non-coding upstream 900592 10203839 ~ 10205678 (-)
G61098 NA non-coding upstream 1203161 10506408 ~ 10507637 (-)
G61136 NA non-coding upstream 1393371 10696618 ~ 10698099 (-)
G60746 NA other downstream 429615 8839211 ~ 8839945 (-)
AMCG00020066 fam69b,fa69b other downstream 441451 8812785 ~ 8828109 (-)
G60516 NA other downstream 1706968 7440803 ~ 7562592 (-)
AMCG00020019 NA other downstream 2798126 6467271 ~ 6471434 (-)
G60348 NA other downstream 2802974 6463548 ~ 6466586 (-)
G61170 NA other upstream 1452221 10755468 ~ 10756419 (-)
G61269 NA other upstream 2392444 11695691 ~ 11701645 (-)
AMCG00020159 NA other upstream 2698453 12001700 ~ 12052211 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other upstream 3181122 12484369 ~ 12509937 (-)
G61589 NA other upstream 3694591 12997838 ~ 12998223 (-)

Expression


Co-expression Network