G61027


Basic Information

Item Value
gene id G61027
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 10085913 ~ 10091086 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU76350
ATCACAGTGTGGAGGTGAACTCGTTGTGCTTTGTGGACTATTTTACAAAGGGATCTTCAAAAGCAGAGGTAAACACAAAAACTGAATAGACAAAAGTATCAGTggacaatttttatttgtaagcatgcaaatacatttcaggtACTGCAAACTCCCATCAATCACCTTTCAAATCCTGAAATCCAGGTTGTTCTACAATGGTGAATTGCCCAAAGCTAACAGTTCATTACTTCAGTGCGACAgcaaacatttaacacaaagaATTGATTCTTTGCTATTCCACatctttcaaaacaaaccaatgcaGACTGCACTGCCTCACTTACCAGTCccagaaaacaaaagggaaaccATTACAATTTGGTagtctgaaaataaacaaatggaataGAAATTATTCCCTTAGATATTTTCCCCATTCGTTTAAagatttctgtttcattttaaattatatatctatatatatatatatctatatatttaaatatagctGATTATGTGTCATAAAAATGAGCATTAAATCCATCTTACGATGGTGCCAGCTTTATACATGACGGATGTGTACcatcttttatttcatttacaatTCAATCGAACAATAgatttgcaaagaaaatgtctaaTACAGACGTAAAATATTCACACGTCAGCTCCACAATCGGTTGTACAATTGACAAACAGGCCTCGTCCCCCAAAACCCCGCCCTCCCCGCATTTCTGGCTAAGCaaatttttaaaattcaaaaaatacaaaaagaagaCTCTCTTTTATTTCCAGGGAAAATAATAGGCGATAAAACTGTAGAAATGCAGACAGAAAATGCTGCAAGCTAACCACAATACTTCAGGTGGCTATACAGTGGGCATGTGcagtacaaataaaaagccACGTGTGTTGTATCACAACTACAGTATAATGTACTTGTTTGCCCAGCTAAGGAACTGCATGCATGTCCATGCCTGAGATTAATTGAGGCCTTTTACTGGATGGATTGGTGGGATGTGTGCAATTTGACTTGGAATAAGCAGTACTGCACAGGTCTTTATTATAGAAAGTGGAGACTCCTGTACCTGCCCACCTAATTCTCAGGGGTGATGTTGTCGATTAAGAAACCGCTAACATGATCCTCACTAAGGGCCAGTAACAACCGCAGAAAAAGGTTGACAGGTACAATGGCTGATGCCTATATATGGTCTCCCTTTCAAAAGAATTTGATGTAGAGCAAATTGATCCCAATCCCCCTCCAGAGTAgcacaacaacattaaaaaacagaaacaaaacctaaCATAATAGAGAACCCTCCCTGCACTAattaatacaaagtaaaaaGGTACATACACAAGATTAATTCATGTAATATGCGATCACCCTCAGTAGGTGCTGAAGATGCCATCAGTAGTTTTGCAACACAAGAGGATGGTTCTTCCCTGAGGGCTGTAGACACAGCATTTCTACCCCCCTTCCACCCCCACTTCTGTCATTAAGAAAGCAAACAACAGAACCTACAACTACAGAGCCTGGACACTGTCTTCAACTTGACAAATCTCAAAAGCTTAGGTGACTACGTATAAAACATACCATTCGTTTCTACTGtgggaaaacagaagacacaacCAAATTCATTACATACAAGTTATCTATTTcagtttgataaaaaaaaaatgcacattatgaTGGCACACGCAGACAAACACAAGATCACAATATAAACCTCTGTATAAAAATCTTCCATTCTGCATTTGTGTGTCTCCATACACCTGGTTTGCTCACACTCAAAGACTGGCCAGCACGCGTTACATACAGCATTGCTTCAAATGTTTTATAGCTTCCAGAAAAGAAGTTGATGTTTTAAAGTCTCTAACATATCAACATATGTACAGTAGAACAGCATTACCGTTCGTGTAAAAATGTtattcacattaaaaatgaatgtacatGTAAGGCCAACAACAGTGtcttatcatttttatatttacataatgcTATACAGTAGGAATTTggtaaaaaataacatttacactATGTGGCATCATTCACAAAATACGTCACAAATATACACCCAAGTACACAGATCTGAACACCTGCTTTAAAGCACTGTTGGATGTAGAAGCACAGTAGTAAGAAACAAGGGAACAAGACTTTGTGTTAAGCACGGCCTCTAGACCAATCTTTCAACACAAAATGTAGTTGCTTTAAAACCACTTATTTAATCCAGCTTGTCAGAGATTTATCAAGTTGACGTCCAGACATCAGAGCCAATCCTTTCCTTACAGACCTATAATATAAAATCCTATTATGAATAGGAAAGTTGCCTATTTTACTGCTTAATGCAGCgatgcatttctgtttcttcttcatATCAAGTACAGGTGCCCTCAGGAGAAAATACCTCACAGAAACGTAAGTGCACAAAACCATAATAAAATATCACCACCTCCTTCTGGGGTCTGTGTAGAATTTACCAACTTGGATGAccataaaaattatatattttttaatgtggtcTTTCATTGTTTGTATAACTAGCAGGACAAcccttgcaaaataaaaataaaaatcctggtGACAGATgggtgatgttttaaaataataataaacagtaaacagaaaaaaaaaaagaaaatcccagtacaaaatattataacaaACAACTTCACAGAAGTTATTATAACATGTTTTGAAATCTGTcaaatttgtaaaattaaaagaaattcaAATAGGAAAAGAAAGCCTGAAGGACAATGAGAGTTTCTTCTGAGACTGATTTGTGGTGGTGAAGTCATCCCGAGATAAAATAATGCAGGAAGTCAGTATAACCATGTATGCAATGCCCTTAaagtaactaaataaaataagagtgTTGGTCTTATTGATTTAcaataattagattttttttttttctttgcacaaGGATACAGTCCTGATCTCGATTGGTTTCCTATCAGCTGTCTCCCAgcagtttaaaaacaatgctTCGAACAGAAAGGAATGGAATGTGACACTGTTTTTCCAAACTGTAAATCCCTCTTTGTTTACTGGCAATGAAGAGGGATTAACTGTGCTAGACCttataaactttattatttattattttatttttctaagctTTAACTCTGTGTGTAAAAAAAGAGACATTCCCTTTTGAGTGTGTGAAGTGCAGAATGCATAAGACCAACACATACAAATGTCACTGCATACAAGGTTATATCTGCCAGTGGTGCGGCCTCCGTTTTGAACTTTTTTAACACTGGCATCAGAATGGACACCTAGCAGATTCAATTTTCCTTGCAATAAGTAACCAGTGTGtagaagaaacagcacacaccGATTTTCAAGTTTTAACTCAATATTTTTGCCGTTAGTGGTGTTTCACTGTTTCatgtttcctcttttttttcttccattgatAATCACAAAATTAGGCATGACcaacaatttgaaataaattaaaaggtaCACTATATTGCACTGTTAACGGTGAGCCCTACGGATACAGgctgttatttatattgtctAATCTTTCAAAAAGTGAcgatcatttatatatttttattttgtcatgcaAAATGCATCcctgtaaataatatattaatttactgttgTAAACACAGTAAATATAGTCAAATAGACAATATTCTGCCATTAGCTGCCAGTTTTAAATAACTCTTTAGCTTTACTTTTTACCATATATTTAACACAGAACAAACAAGGTTATAAAAAATTGCACTAGTTAAAATGCACTCGTGCATTTAAAAAACCCCAGAGCACTTCACTGTGACGGCGTCCTGACAAGGGTGTATGTTGAAGTTACCCACAcagctgtaaaacaaattaaaaaaataacaggcaATGTTTTCCTGcaaggaaattattaaataatgtggCAAATGCTTAATGGCAGATGtcctctttttaaatatactttgttAACTTGCTAACTTGTTAATATTCAGAATTTTTGCACTCTGCCTTTTGAAGCAGGTACATGTCAAAGTGCATATCTTTTCATTTGCTCCACTGCTTTGACAACTACAGAACAGTGATAGTTTGGAATCATCAATTACAAGTGAAAGTTTCACCATGTTAGCACTGAGGCAAGGGATCATATGAAATGTGCAACTATGCTAATTAATGACCAGTGATGGTACAGAGAATATTGTCTcactatacaaacaaaacaccagagagagacagaaaataaattgtatttcactaGATGCATCGTGGCAGGGTCCTGCTAGTTTATAATCAAGTTTTCTAGagtggagaaaagaaaatgccattCTGTATTACAAACGGCTTTGCTTTTGCACCCGGCTATTATAATGCTGCTTTTAAGCATCAAGTTATATAATGTCCAAATTCCTATGATGTTGGAAAGTGAACCTACCAAATTCAACAAAGAAAAgttaggaaaaaaaatgcaaatgaaagggCTTCATTCATAGTATCAAAAGGTCCACAGGAATCTTTTTGATGccccataaaaaaaaagaaatctaccTCGAGTATAAAAAGCAGTATTATAAATGCTTGTTTTGAGATATCACAAGCAGGGTTGCTTTTTGTTCCTTCTCAGCTTCCATTGAGTAGCATCTCTCCATTGGCCGTGGTGCCGGCCAGATCCCTCTTCCTGTCCTCTGCAGCATGGAGCGGCCTGGTCTTCAGGACGAGCTTGCTGACACTGAGACCGGCAGAGCCGAGCACCCCTGCTGGGGAGGCAGACTTCCTGAAACACACAGTGATGGGATGAAAtactgattgtttgtttgtttgtgttttactttttggACTGTCTGAAATGCTGCTGTGGAACGGAAGCAATGTCTGTCAATGCCGAAGCACAAGGCTAACCCACGGGGGAGTGTAAAGACATACTGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU76350 True 4883 lncRNA 0.36 2 10085913 10091086

Neighbor

gene id symbol gene type direction distance location
AMCG00020112 NA coding downstream 142837 9931750 ~ 9943076 (-)
AMCG00020107 NA coding downstream 195350 9873449 ~ 9890563 (-)
AMCG00020106 NA coding downstream 233367 9826766 ~ 9852546 (-)
AMCG00020100 NA coding downstream 286755 9792806 ~ 9799158 (-)
AMCG00020098 NA coding downstream 302477 9780815 ~ 9783436 (-)
AMCG00020117 strbp,LOC107686417,LOC107713322,LOC107685126 coding upstream 136408 10227494 ~ 10261824 (-)
AMCG00020123 NA coding upstream 447196 10538282 ~ 10540365 (-)
AMCG00020125 NA coding upstream 453699 10544785 ~ 10550796 (-)
AMCG00020124 NA coding upstream 540206 10631292 ~ 10647839 (-)
AMCG00020132 NA coding upstream 613889 10704975 ~ 10727531 (-)
G60993 NA non-coding downstream 157047 9927977 ~ 9928866 (-)
G60839 NA non-coding downstream 782666 9269560 ~ 9303247 (-)
G60833 NA non-coding downstream 925180 9157927 ~ 9160733 (-)
G60774 NA non-coding downstream 1068507 8980273 ~ 9017406 (-)
G60730 NA non-coding downstream 1276020 8807020 ~ 8809893 (-)
G61052 NA non-coding upstream 112753 10203839 ~ 10205678 (-)
G61098 NA non-coding upstream 415322 10506408 ~ 10507637 (-)
G61136 NA non-coding upstream 605532 10696618 ~ 10698099 (-)
G61137 NA non-coding upstream 607043 10698129 ~ 10700883 (-)
G61200 NA non-coding upstream 870050 10961136 ~ 10961434 (-)
G60746 NA other downstream 1245968 8839211 ~ 8839945 (-)
AMCG00020066 fam69b,fa69b other downstream 1257804 8812785 ~ 8828109 (-)
G60516 NA other downstream 2523321 7440803 ~ 7562592 (-)
AMCG00020019 NA other downstream 3614479 6467271 ~ 6471434 (-)
G60348 NA other downstream 3619327 6463548 ~ 6466586 (-)
G61170 NA other upstream 664382 10755468 ~ 10756419 (-)
G61269 NA other upstream 1604605 11695691 ~ 11701645 (-)
AMCG00020159 NA other upstream 1910614 12001700 ~ 12052211 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other upstream 2393283 12484369 ~ 12509937 (-)
G61589 NA other upstream 2906752 12997838 ~ 12998223 (-)

Expression


Co-expression Network