G61302


Basic Information

Item Value
gene id G61302
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 11925564 ~ 11927864 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU76703
TTttacataaatgtgtttttatttagtgaaacAGTATAATCGATGTTACAAGCTGAAAAAATACAGCAACTTATTACAAGGCCAAGGTAACAAATAACTTCGCTACATATTCACAGGGCAGTAGAGGTGAGTGGTCATTATTTAACAGTAGCTACAGACACTATAGAAACAATATTTGTACACAAATAACATGCAGCAACTTCTTAGAGCAACCTAGGctgaaggaaaaaggaaagaaaatacctTTCACATATGAGACCAactcaaaaacataaaaacaagttCTTCTGTCAATACCATTGAGGTGGGCCTCATGAGTCAAAGCTGCCTAATCCCCACTCCCCAAgccttgtctttttttctgtacatttcacaAGATGGGTCAACCATGCATTTTGGCACTCTAAATTATTTTGAGACAAACAAATCATCCAAAAGTATCACAAAAtacagaaccccccccccaaaaataaaaataaaatctggttGTACATTATAACCAGTACTCCctacaatacaaatcaaatcGCATCCAAAACGTTAACAGTGTACAATGTTTTCGTGTTCCACTTCCTgatgacatttacatttctttataagAATGACTTGATTGCATTCAGAATTATTTATACTGTCAGAATGATGTAATAATTCAacttctttttaaattattatttcatgagAGATTCACAATATATTTGGAAATAAGAACATTAAAACTACAGTGCCATTTCACTCAGAGTTTGGTTTGGATacagtgaaagagaaaataaaaaaaaacgatgGGTTTGTGGAATACTTTCACACCTTGTTCCTTGTCACAAAGACACATGTCTGGGATGTATGctataaaacaagacaaataaaataatatgtaactGACAGagctatattttattgtttgcacATTTATTCTAAACAAAGGGAAGTGGAGTTTTTTCTAACAtgctgtacatgtatgtattgatcAGAATACTGGCTCCATACATCAAGACAAAATAACTTTCTGGTCATGCCCAACCTAATGTTCATGTCTGTTGCCACTGGAAAGGTGCTGCAAGTTTCAACTACAGACAAGACAAAGATCATGTTTGTCACTGAAAATGTTCATTTCACATCTTTCATAACAGTGATACAGTCTGGAGGCTATTGCGTGCTTCAGTTCCCCACAATACACAGAGTTGCACATGTCATGACAGATGACTAGAGAAATAGCTGGTCGGTCAGCTAAACAGCTGAAAATCAAACAATCACCTAGCCAACACAAATACAGCTTTACGTGTACAACCCTGCTCGAAGGAAAATGCAGCACTTTGCTTTTTTGTGTCACAGTTATTACTCTATAactataatattaaataataaatccttAACTTCCACGCTATGGGAGTACAAGCTTGAGCTACATAACACAGTGAACACTAGGGCACACTGCTCACATGGCTATTTCTTTCTCACTTGGACAATTAAACAGTTACTTgtcagcattttatttaatcttgcaTCTACAGTACTTTATCTTTCTTCACAACGATGTTACAGAGCAGCAGGTGTACAGTCATGACTGATACCATGGGCTATATATGGGCTGATATGGGCTTCAGAAAGACCACAAATTATAAAGTATTGCAGAAAAACATctttacacaacaaaacagaaagacaacagAAGTTTTAAAACGTCATAGAGGGACAAATTATTCCACATACCACATTCCACCACTTACAGTTTGGTTACTGAAGCATGTCGACCTGAtaattgaaacaattaaaatgcaataaccTTTCCAAACCACGCAGACTTTCATAATACTGTCGAGATTGTTTTTGTGCTTATGCACGAAACATGTCCATACacacttttaatacattttgttgtataaTACACACTATTTTACTAATAATGGATCTTCATATCTCACTAATAAaacttgaattacaaataataacaataataatggacATTTTCCCATTTAATTTACGTGATCCTCTCTATAATGTAATGATTTCTAAATGGTCTGATCATTCAAGtaagtttaattattatatatatattttaatgcatatatacatgttataGAGGAGCTCAGAATAATGTCCAGGCAAATAatctttaaagaaagaaaattacacCATTTTACAATTGAAGGCACAGCCACACAACAGCAAGTGAAACAATTATCTTtagaacaaaagcacaaaagctaaaaataagGTGATTTGAACTCCACTTCCTAGTTCATTCTCAGTCTCACACGAACAGGAAGTGAGCTGCATGGTGTGCATGTGAACCATAAAACC

Function

NR:

description
deoxyribose-phosphate aldolase isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU76703 True 2301 lncRNA 0.34 1 11925564 11927864

Neighbor

gene id symbol gene type direction distance location
AMCG00020151 angptl2,LOC106579898,LOC107669255 coding downstream 81849 11818725 ~ 11843715 (-)
AMCG00020139 mapkap1,LOC107103532 coding downstream 737916 11181386 ~ 11187648 (-)
AMCG00020141 mapkap1 coding downstream 763342 11144695 ~ 11162222 (-)
AMCG00020140 mapkap1 coding downstream 815806 11098474 ~ 11109758 (-)
AMCG00020135 LOC103036375,LOC107681247,LOC108423724,LOC102294584,LOC107560229 coding downstream 981800 10934775 ~ 10943764 (-)
AMCG00020155 NA coding upstream 31753 11959617 ~ 11960888 (-)
AMCG00020153 fbxw2,LOC106571134 coding upstream 45759 11973623 ~ 11989110 (-)
AMCG00020162 NA coding upstream 124350 12052214 ~ 12069743 (-)
AMCG00020158 ncs1,ncs1b coding upstream 142782 12070646 ~ 12085537 (-)
AMCG00020161 NA coding upstream 200744 12128608 ~ 12156720 (-)
G61273 NA non-coding downstream 202150 11713501 ~ 11723414 (-)
G61206 NA non-coding downstream 932318 10992899 ~ 10993246 (-)
G61203 NA non-coding downstream 955965 10967180 ~ 10969599 (-)
G61201 NA non-coding downstream 963054 10962311 ~ 10962510 (-)
G61200 NA non-coding downstream 964130 10961136 ~ 10961434 (-)
G61424 NA non-coding upstream 466421 12394285 ~ 12395028 (-)
G61470 NA non-coding upstream 502938 12430802 ~ 12451793 (-)
G61477 NA non-coding upstream 565937 12493801 ~ 12499426 (-)
G61488 NA non-coding upstream 650807 12578671 ~ 12583748 (-)
G61550 NA non-coding upstream 791503 12719367 ~ 12743437 (-)
G61269 NA other downstream 223919 11695691 ~ 11701645 (-)
G61170 NA other downstream 1169145 10755468 ~ 10756419 (-)
G60746 NA other downstream 3085619 8839211 ~ 8839945 (-)
AMCG00020066 fam69b,fa69b other downstream 3097455 8812785 ~ 8828109 (-)
G60516 NA other downstream 4362972 7440803 ~ 7562592 (-)
AMCG00020159 NA other upstream 73836 12001700 ~ 12052211 (-)
AMCG00020180 tubb2b,tubb4b,tbb2c,LOC103372938,LOC106580001,LOC100136483,LOC105029894,LOC103045037,LOC105891054,LOC105023713,LOC106593669,LOC108260450,LOC108241762,LOC106575097 other upstream 556505 12484369 ~ 12509937 (-)
G61589 NA other upstream 1069974 12997838 ~ 12998223 (-)
AMCG00020212 NA other upstream 1289132 13216996 ~ 13224512 (-)
AMCG00020230 NA other upstream 1667654 13595518 ~ 13596917 (-)

Expression


Co-expression Network