G61435


Basic Information

Item Value
gene id G61435
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12417810 ~ 12506599 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU76859
TTTAGATCTTAAGATCAAGTGCATTTATTGATTTCTCCAgtacagttaaaacaaaaacagaataacagAGAAATGACAAAGAATGAGACAGGTGGAGAAGTGCAAGCTTATGCGGCCTCTtcatctccctcctcctcctcgaaCTCGCCCTCCTCCTCGgCCGTGGCATCCTGGTACTGCTGGTACTCGGACACCAGGTCGTTCATGTTGCTCNNNNN
>TU76860
GAGAGACTTGACcaaaaaaaggcagttttattTGCACATTGTCTTCTGTACAGAccgaacaaaaaaataaaaaataaaagtgacagCAAAAGAAATTCTGAACATTGAAAATAAGTTTTGAATGTCAGTGAGTTTGTACagcttggattttttttttttttaaatttacaaaaagCTTAGGCCaattcctcctctccctcctcctcctcgaaCTCGCCCTCCTCCTCGgCCGTGGCATCCTGGTACTGCTGGTACTCGGACACCAGGTCGTTCATGTTGCTCNNNNN
>TU76861
gaatgagagagagacttaACCAAAAAGGTGGTTTTATTTGCAGGTGCCTTCTGTACAGAATGACGAGTGAAAAAGGGAATAGCAGAAGtgacagcaaaacaaagaacaaattctgaacattgaaaataaatgttgcacgTCAGTCAGTTTGTACAGCTTGGAACAATTTACAGAAAGCTTAGGCCaattcctctccctcctcctcctcaaactctccctcctcctcagCCGTGGCATCCTGGTACTGCTGGTACTCGGACACCAGGTCGTTCATGTTGCTctcctcctcctcgaaCTCGCCCTCCTCCTCGNN
>TU76862
ataacagTATCTGATAAAGTACAGTGGCGCTCTCACCGCTTCTTTAATGATGCGAGTTATAACCGCATTGGGCAGGTTAAGGTCCTCTGGTCTCTCGGCCATCGCCACACAGCTCCTGGAAAACAAACGCCACAGGTCTGACTACTGTGCAATAAGCATTCAATAGTTTATACATGTATACGTGTGTatgtgcataatttaaaaaatacaaaccgtACCGGTTATTTCACTATGTAAGgatccttttaaaatatgcacttGTATACAACATGTGTTATGAATATATGACGTATCTATTTATCAGGTTTACCGAACTCGACTCCCATTACAGAACCACAACTGTATTCAAAACATACGAGACACCACACAGTGTTAAACGGGACATCGCTGAACCACCATACTGGGACTAACATACAGGGCTATCACTATGTACCCACGTGTTTCTTAAAACCTCCCTGCCGCCCGGTGCGCAGGTCCGGGCGCAACACAGCCTGCAGGCGGCTGGCAGCGGCCTGTTCCCACTACCCCAGACAACCGACTCCGCTCTTCCGTCAACCACTTGTACTGACTAGAGCCAATATATACggataaatatattgttttgtatttttctctaaACTTACACAGCCTATCTCTTAGACCGATTCGGTTAGTCTTCCCCAGTCCGTACCGATCTCGGCGTTATTAAACCCACTTCAGTTAATGCTTCGTCTCGCCggactttttaatgttttgaagtaTTTTCAACGACAGCCCGCGTGAACCTTCCAAACAGCCTTTCACCTTTCACCCTTCACCTCCCAATGATTTGCAACTTCAACTAAAATTATTtggaagacattttttttagATCTTAAGATCAAGTGCATTTATTGATTTCTCCAgtacagttaaaacaaaaacagaataacagAGAAATGACAAAGAATGAGACAGGTGGAGAAGTGCAAGCTTATGCGGCCTCTtcatctccctcctcctcctcgaaCTCGCCCTCCTCCTCGgCCGTGGCATCCTGGTACTGCTGGTACTCGGACACCAGGTCGTTCATGTTGCTCNNNNN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU76859 False 218 lncRNA 0.46 2 12489521 12499428
TU76860 False 287 lncRNA 0.40 2 12493852 12499428
TU76861 False 313 lncRNA 0.47 2 12499143 12506599
TU76862 True 1063 lncRNA 0.44 3 12417810 12499428

Neighbor

gene id symbol gene type direction distance location
AMCG00020172 NA coding upstream 22770 12381813 ~ 12395040 (+)
AMCG00020166 NA coding upstream 46098 12368773 ~ 12371712 (+)
AMCG00020165 NA coding upstream 215123 12200128 ~ 12202687 (+)
AMCG00020163 ptpa,LOC102782294 coding upstream 219163 12185834 ~ 12198647 (+)
AMCG00020157 NA coding upstream 245804 12157541 ~ 12172006 (+)
AMCG00020176 NA coding downstream 56561 12563160 ~ 12564443 (+)
AMCG00020182 NA coding downstream 144560 12651159 ~ 12651764 (+)
AMCG00020181 NA coding downstream 145617 12652216 ~ 12654743 (+)
AMCG00020187 NA coding downstream 158309 12664908 ~ 12690345 (+)
AMCG00020191 nrarpa,nrarp coding downstream 228276 12734875 ~ 12735213 (+)
G61338 NA non-coding upstream 288239 12126842 ~ 12129571 (+)
G61336 NA non-coding upstream 401063 12016496 ~ 12016747 (+)
G61335 NA non-coding upstream 401659 12015698 ~ 12016151 (+)
G61333 NA non-coding upstream 405403 12011960 ~ 12012407 (+)
G61332 NA non-coding upstream 405934 12011661 ~ 12011876 (+)
G61460 NA non-coding downstream 75662 12582261 ~ 12585656 (+)
G61568 NA non-coding downstream 323373 12829972 ~ 12852064 (+)
G61588 NA non-coding downstream 491251 12997850 ~ 12998227 (+)
G61650 NA non-coding downstream 830397 13336996 ~ 13338088 (+)
G61668 NA non-coding downstream 834354 13340953 ~ 13341315 (+)
AMCG00020171 rpl12 other upstream 2859 12408962 ~ 12414951 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other upstream 1117778 11274024 ~ 11300032 (+)
AMCG00020134 rabl6 other upstream 1448212 10945592 ~ 10969598 (+)
AMCG00020129 tmem8c,LOC107720238,LOC107587553,LOC107699700,LOC107567143 other upstream 1662435 10738502 ~ 10755375 (+)
AMCG00020122 urm1 other upstream 1918304 10480534 ~ 10499506 (+)
AMCG00020177 NA other downstream 13165 12519764 ~ 12542261 (+)
G61491 NA other downstream 109193 12615792 ~ 12619817 (+)
G61675 NA other downstream 843078 13349677 ~ 13350712 (+)
AMCG00020245 LOC107746475,LOC107567702,LOC107595988 other downstream 1280415 13787014 ~ 13792944 (+)
G61894 NA other downstream 1326571 13833170 ~ 13834832 (+)

Expression


Co-expression Network