G61440


Basic Information

Item Value
gene id G61440
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 12484377 ~ 12504599 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU76869
CAAACACAAAGTTGTCGGGTCTGAAGATCTGCCCAAAGGGTCCCGACCGCACAGAGTCCATGGTGCCAGGCTCCAGGTCCACAAGGATGGCACGGGGCACATACTTGCCACCTGGAAATGGATAGAGAATCAAAAATGAGTAAAGAATGATTTCCACTGAACAGTGCCTGCTCCTTCAGGGCTCAAACACAAGTATGGAATACCAACCTCCAAACTCCGCCTGGAGTAACCAGGgacacttaaaaacaatacattttctaagaAGGAAAATTGTTCTTTTCAAATGGAATGGCAAACTGCATCACTGCGGTCAATACCCTGCAACATTATTTGGAACATCAACTTTCACTATCTGAATCACATCTGTGTAAATCCTGCAACAGTTTCAGATGTTAATCACCATCATAACGTTTTTCTTATCCATAGAACACAACTAGGCCCCGCTGCCCCCAAAaacagatatcttgaaataggTTTCTTCATCGGTAATACATGCATGGTAGAGTAATATCCCTGGACTCGAATACCGGAGGCTTCATTGTAGTACACGTTGATCCTCTCCAGCTGCAGGTCGCTGTCTCCATGGTAGCTCCCAGTGGGGTCGATGCCGTGCTCGTCGCTGATCACCTCccagaactgagagagagagagcacgtTATTGAGAGAAAATAGCTCTTTAGATATACGGTAGAGACGCgcacaaaaaaagtgaaagtcTAATCTGCAAAATGTTGGACAATGATTGTCAGTTGGAAAGTACAATATACATGAAGGCATTCTCAGTTGCCATGGAAACCAGGGAACACCAGTACTGAACGCACATGACAGCGCAGCACAAGTGAACCAACAGGGAACCCCCGACCGCCTGTATGCAGGCCAGCCTCACCCAGCAGCAGAGGGACGAGGTGGCACAGGTGAAGCGAGCCGAGTCACCGTCAGGGAAAGACTAAGCAGGAGAACGACAGACCCAGTTAAAGGCCATGAAGCAGGACATGCAATAGGACATGCAGCTCAGGGACAAGACTCAACAAGGAGATCCAGAGCCCGAGAAGAGAAAACTATCCCAGACGTGACTGTCCTAATCAACAGCAATGGGAAGTAATTGAACCCCCAGTGACTGTTCCTAGACCAAAGAGTCTGGAGGAACACAGTTCAGCCTGCAGCTGCACTACCCACACAGCCTGCATTGTGATCTACACAGGTACTAGTGACCCAGGCACCCTGCTACAGCAGCACACTGCCGGAGTGGTGAGGACGGCAGAGCCATGTATCAAATTAGCCAACTACCACATGGTTAATGCTGCACCAAGCATGGTGCATTTGAATAAAAGAGGGATTAAGGCATTGCCAAGACTAAAGGATGCTGCCCTGGGCCACAGCCCAATCAGGCCCCCCACCCACACTGCCAGCAAagtccagcacagcacagcctcAAGCAAAGATCCCTTCCCCCTCCTGCAAGATTTAATTCATGGcgatttgaaattgaaattttatttatacattttaaaaaaagaagagaaattGAGCACCaaatttgagggatccatgctagaaaaacagttttgaatgcTAACCCAATTACCGGTATCCAATGCAAAAAGACAAATCTGCTGTGAATTTGACTGCATGACCCAGCCCATTGTGCTGTACAAGAGTTAAATGTGTAGACTGAGTGGACCTCCTACAAGACTGCACTAAAATGGGAAAAACACCCAGTAGAAACCCTGCATTCAGTATTCTGTAAAATCATATTACAAGTACAAAGAAACTTCAACAATGGTTGCAGGGCAGCATTAGGTCTAGAATATGCATCGTCATAGAAACAGGCtgacacaggcagacctggctgCCCCGAGTGGACCAgcactgtggtcactgagccagGATAGGTCTCTCTTCTGCCAAGCAATACATACACCCACATTAGGgacatttccattttcacacacaaaacaaattcaagtcAGTCAATGAGCTGACGTCACAGGCATTGTTTCGATTAGATGCgtttcacaaaccctgcagtaATCGATTTCATTCAGTAACAGATCTTACGAAAAAACTGCCAATCATATTGGTTACAGCTTTATTAttcatcatagatttacattgaTCAATGCAAATTTAATAAACCATTGACAACGCGTCAGTCTAGAATTATGCATAAGGCGTTGGCTATGCGGTTCACGGCTTCATTGTGCAAGACGTTGGCTTTTGCCACCGCCAACAACGGGCAGCAGTATTTTtagtgacatttttttatttgatcatgTCCCTCTTGATCTCCACATCGTCTCTTGGTTCCGCAGTACCCGTTCACAGCTGCGCTGGGCTGCGGCGATTTTGCCGATTTCTGCGGGTGGGGCTCAGTGACGTCACGCAGCAGCACTCGAATCTCTGCTCAAAACTGCGCTTCTCGAACGCGACCACAGCCGCCGCAGCTGGAGGCGCACAATGTGCAACTGCACACCAGCACATGCCGTCTCAACACACTACAATacgcattttattttttaaacacacacactataagtTAAGTGTCCCAGACAGTAGGGCGTCCACACCAAGAATATATAAAATTTGGTACACCAAAGATACCAGGGCGATATCATAAATGCGACGAAAAATGAAGTGTGGAGTGATGGACAATCAATACGTCCATTCGCGAACCAGGAAAAGGAGGAGCCATCACGACTGGAACTTTCTAAAATGGCGGACaatcctccccccccccctcaacaCACAAAAGCTCAAAGGCCAGTACATcaagatggaaaaaatatatatatatacacattgcaGACATCCTGATGAAttgtcttgtattttattaaacaccGAATTAACATGTAATTAGGTCAGGTAGTAGCccatcacatttttattgtttctcaTGCAATGTTTTATTGCTTTGGAAACACTGCGAATCTGTTACTTATGCCAAATAAAGCACCTTAAATAGAAACTGCGGTGCCACTGCGTCACAGGCAAAGCCCAGGCTCGGACACTTCCATCCTCCACCGCTATAAACCCCACAGTGAAGGGAGGAACATGACTGGTCTGGAGACAACAGCGCCGATCTGTGCGGGGCGAGGCTCGCCGCTATTATGACGATGCAAAggtttatacattaaaaaaaagatacaagcCCACATCACTCATGTCTAGTAATCAGTTTGGTTATACAAGGATTTGACAAACGTAAACATGATTAAACACACATCTCGAAGATTGTACGTTTCAGAAAGCTTAAGGATCTTCAGGAGACAATAGACCCAGGGTGGGTTATCGACGAAGCTCATCTATGCACCATGAAAAATGACgcacttaattacatttgaaagggATGGGCCGGCGGGCGGCATTAAGATCTACTCTACACAGATCTGGTGCCACGTTGAAATTGCCATCTTAGTATCGTCGATGGGGTGGggaaataaatcatatttggTCCCTTAGATTAACATCGGACCCGACCAGCCTGACTACAGCTGAAGCGTCTGCCAAGGTGTCGCCAGAGGCCGGCACTGgactttgctttttgtttgttcctttcTGCCATATTGCTGCGTGCAGCCAATTTCCGCATTGCACCGCGCAGGGAACACCCCTCCATCACACCGCGCTTCCATCGAGGCTATTCAATGGCTCTCATACAGACCTTGGCGCCGATTTGATTTCCGCACTGGCCGGCTTGCAGATGGACAATCTCCCTCATGTTGAAGCGGTGTTGAAAATTCTCGGGTGacgcagtaaaaaaaaatcagagacagaaaaacacacgTTGTCTCAGCAGCTGCAGTCTGTGTTTTATGCGCCAAtcttaacaaaaaaatcccCAGGACCTCAC
>TU76870
CAAACACAAAGTTGTCGGGTCTGAAGATCTGCCCAAAGGGTCCCGACCGCACAGAGTCCATGGTGCCAGGCTCCAGGTCCACAAGGATGGCACGGGGCACATACTTGCCACCTGGAAATGGATAGAGAATCAAAAATGAGTAAAGAATGATTTCCACTGAACAGTGCCTGCTCCTTCAGGGCTCAAACACAAGTATGGAATACCAACCTCCAAACTCCGCCTGGAGTAACCAGGgacacttaaaaacaatacattttctaagaAGGAAAATTGTTCTTTTCAAATGGAATGGCAAACTGCATCACTGCGGTCAATACCCTGCAACATTATTTGGAACATCAACTTTCACTATCTGAATCACATCTGTGTAAATCCTGCAACAGTTTCAGATGTTAATCACCATCATAACGTTTTTCTTATCCATAGAACACAACTAGGCCCCGCTGCCCCCAAAaacagatatcttgaaataggTTTCTTCATCGGTAATACATGCATGGTAGAGTAATATCCCTGGACTCGAATACCGGAGGCTTCATTGTAGTACACGTTGATCCTCTCCAGCTGCAGGTCGCTGTCTCCATGGTAGCTCCCAGTGGGGTCGATGCCGTGCTCGTCGCTGATCACCTCccagaCTTGGCGCCGATTTGATTTCCGCACTGGCCGGCTTGCAGATGGACAATCTCTCTCATGTTGAAGCGGTGTTGAAAATTCTCGGGTGacgcagtaaaaaaaaatcagagacagaaaaacacacgTTGTCTCAGCAGCTGCAGTCTGTGTTTTATGCGCCAAtcttaacaaaaaaatcccCAGGACCTCAC
>TU76872
GTTTCCGGCACCACTCTGGCCTGTTGACAAAACCAGGGCATCAAGACAATACTTGCAGCAGCTTCAGCACAAAGCAATAACAAACAGATCTGAAATCTTACTTAAGTGTACTGGAGTACAACAGTTTACTGATCTAGTTTTTATAGCATTGGCACATTTGGGATTGTATTTTGTCACATCCacttaataattaaaagcaaaaattcAGCACTCACCAAACACAAAGTTGTCGGGTCTGAAGATCTGCCCGAAGGGTCCAGACCGCACAGAGTCCATGGTGCCAGGCTCCAGGTCCACGAGAACGGCACGGGGCACATACTTGCCACCTAgtagaaacacatttttgttaggGTTATCCTTTTATAAATGAAAGTAGGATTACACCTTCCCTGCACAGAATTGAGGATGGATTATAAATACCAGGCTGAGAGAATCACATTTATTCTCTTGATAAATAGTGAAACAGAGTTAATGTCACTGGCTCACCGGAGGCTTCATTGTAGTACACGTTGATCCTCTCCAGCTGCAGGTCGCTGTCTCCATGGTAGCTCCCAGTGGGGTCGATGCCGTGCTCGTCGCTGATCACCTCccagaaGCAGGTCGCTGTCTCCATGGTAGCTCCCAGTGGGGTCGATGCCGTGCTCGTCGCTGATCACCTCccagaactgagagagagagagagagagagagagagagagaaaccacaAAAACTAAAGTTGAAATTCTAAAAATCAGCAAAACTTGGGACAGTGATGCAATTTTTTATGCACGAATTATGTACATGCTGCAACACCAGAAGGAGGGGGGAAAAGCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU76869 True 3853 lncRNA 0.46 3 12490997 12504599
TU76870 False 824 lncRNA 0.46 3 12490997 12504599
TU76872 False 815 lncRNA 0.46 3 12484377 12495791

Neighbor

gene id symbol gene type direction distance location
AMCG00020169 NA coding upstream 2472 12479904 ~ 12481905 (+)
AMCG00020173 lmo41,LOC105911081,LOC108260376,LOC106585438 coding upstream 31592 12448768 ~ 12452785 (+)
AMCG00020170 NA coding upstream 53225 12428416 ~ 12431152 (+)
AMCG00020172 NA coding upstream 89337 12381813 ~ 12395040 (+)
AMCG00020166 NA coding upstream 112665 12368773 ~ 12371712 (+)
AMCG00020176 NA coding downstream 58561 12563160 ~ 12564443 (+)
AMCG00020182 NA coding downstream 146560 12651159 ~ 12651764 (+)
AMCG00020181 NA coding downstream 147617 12652216 ~ 12654743 (+)
AMCG00020187 NA coding downstream 160309 12664908 ~ 12690345 (+)
AMCG00020191 nrarpa,nrarp coding downstream 230276 12734875 ~ 12735213 (+)
G61434 NA non-coding upstream 16084 12414999 ~ 12468293 (+)
G61338 NA non-coding upstream 354806 12126842 ~ 12129571 (+)
G61336 NA non-coding upstream 467630 12016496 ~ 12016747 (+)
G61335 NA non-coding upstream 468226 12015698 ~ 12016151 (+)
G61333 NA non-coding upstream 471970 12011960 ~ 12012407 (+)
G61460 NA non-coding downstream 77662 12582261 ~ 12585656 (+)
G61568 NA non-coding downstream 325373 12829972 ~ 12852064 (+)
G61588 NA non-coding downstream 493251 12997850 ~ 12998227 (+)
G61650 NA non-coding downstream 832397 13336996 ~ 13338088 (+)
G61668 NA non-coding downstream 836354 13340953 ~ 13341315 (+)
AMCG00020171 rpl12 other upstream 69426 12408962 ~ 12414951 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other upstream 1184345 11274024 ~ 11300032 (+)
AMCG00020134 rabl6 other upstream 1514779 10945592 ~ 10969598 (+)
AMCG00020129 tmem8c,LOC107720238,LOC107587553,LOC107699700,LOC107567143 other upstream 1729002 10738502 ~ 10755375 (+)
AMCG00020122 urm1 other upstream 1984871 10480534 ~ 10499506 (+)
AMCG00020177 NA other downstream 15165 12519764 ~ 12542261 (+)
G61491 NA other downstream 111193 12615792 ~ 12619817 (+)
G61675 NA other downstream 845078 13349677 ~ 13350712 (+)
AMCG00020245 LOC107746475,LOC107567702,LOC107595988 other downstream 1282415 13787014 ~ 13792944 (+)
G61894 NA other downstream 1328571 13833170 ~ 13834832 (+)

Expression


Co-expression Network