G61774


Basic Information

Item Value
gene id G61774
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 13595514 ~ 13596726 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU77328
tttttgttatttctttgcagttttattttagtttgtttaatgaATGGGGGGTCCCTTATAGATGTCAAGTGCAGTGACTACAGTGCTGGGGTCTGTAGTCCCTGGGGTACAGTCCTGCACAAAGTCTCCAGTTCAGTCTCTGTATCACAGTGCATGGCAATGGTCTTTCTCCCCTCCCAATTCTCTCTAGCGAACGTAGTTCTTGGGGTACAGCTTGAACAGCTTGCCATCCTGTGAGGGCTCGAACCCATAGCGCTCCAGCTCCTGGGGGTGGAAGCGGCCCTCGCGCAGGTCGCGCTCCACGGCAGGAGCCACGGTCTGGGTGAACAGCGCcttgggggtgagggggggctCAGAGCCTGTGGGGGCACGGTATGACACGTAGGGCTTGAGCCGGAACCCCTCCATCAGCGGCACAACCAGCTGGGGCACCATGGCAGGCAGGCGCAGGAACTTACCGCTGCTGGTCAGCACGCCTGTCCTGCGCGCACCCCGGCCCTTGTAGAAGGTCCGCGGGCCTCGCTTGCTGGTGAACTGGGCCATGCGGTCCGCCCCCCGCACCAGGCCCTGCGCCAGGCCTGACAGCACCCCCATCTCTGCCTCCCACAGCAACAAGAAAgacacacagcaacaacagcagggCCAGGGGCAGCACACTGGGATGGTTTAACACAGTAGAGTGCGATGCAGCCAGGGGGACAAGAGGCTGAGTCCTTGGAGGAAGCAGTGGCAGCAGACAGCAACgtgtgagagagatggagtTATTTGATCACAGCTATCCTCACCCGCAGTAGGAGGAAG

Function

GO: NA

KEGG:

id description
ko00190 Oxidative phosphorylation
ko03010 Ribosome
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU77328 True 801 lncRNA 0.59 2 13595514 13596726

Neighbor

gene id symbol gene type direction distance location
AMCG00020226 NA coding upstream 63 13592096 ~ 13595451 (+)
AMCG00020222 clic4,LOC107661585,LOC107595720,LOC108436785,LOC106563124,LOC107692326,LOC107736903 coding upstream 9564 13583281 ~ 13585950 (+)
AMCG00020223 abca2 coding upstream 16339 13545411 ~ 13579175 (+)
AMCG00020225 NA coding upstream 78747 13513554 ~ 13516767 (+)
AMCG00020217 pou5f3 coding upstream 134033 13456679 ~ 13461481 (+)
AMCG00020228 NA coding downstream 1243 13597969 ~ 13613378 (+)
AMCG00020227 NA coding downstream 29137 13625863 ~ 13639928 (+)
AMCG00020232 NA coding downstream 135914 13732640 ~ 13736452 (+)
AMCG00020247 NA coding downstream 158209 13754935 ~ 13759675 (+)
AMCG00020242 ssna1,LOC107697981,LOC107684356,LOC107730341,LOC107559739 coding downstream 225035 13821761 ~ 13824208 (+)
G61676 NA non-coding upstream 243980 13351248 ~ 13351534 (+)
G61674 NA non-coding upstream 246368 13348855 ~ 13349146 (+)
G61672 NA non-coding upstream 251475 13343757 ~ 13344039 (+)
G61671 NA non-coding upstream 252133 13343143 ~ 13343381 (+)
G61670 NA non-coding upstream 252501 13342680 ~ 13343013 (+)
G61841 NA non-coding downstream 112109 13708835 ~ 13709496 (+)
G61871 LOC100846954 non-coding downstream 154361 13751087 ~ 13751363 (+)
G61904 NA non-coding downstream 280585 13877311 ~ 13930740 (+)
G61895 NA non-coding downstream 291425 13888151 ~ 13890428 (+)
G62012 NA non-coding downstream 538572 14135298 ~ 14136287 (+)
G61675 NA other upstream 244802 13349677 ~ 13350712 (+)
G61491 NA other upstream 975697 12615792 ~ 12619817 (+)
AMCG00020177 NA other upstream 1053253 12519764 ~ 12542261 (+)
AMCG00020171 rpl12 other upstream 1180563 12408962 ~ 12414951 (+)
AMCG00020143 pbx3,LOC107669256,LOC108434408 other upstream 2295482 11274024 ~ 11300032 (+)
AMCG00020245 LOC107746475,LOC107567702,LOC107595988 other downstream 190288 13787014 ~ 13792944 (+)
G61894 NA other downstream 236444 13833170 ~ 13834832 (+)
AMCG00020255 NA other downstream 266751 13863477 ~ 13872645 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other downstream 286099 13882825 ~ 13885116 (+)
AMCG00020267 NA other downstream 351700 13948426 ~ 13951047 (+)

Expression


Co-expression Network