G62039


Basic Information

Item Value
gene id G62039
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 14241865 ~ 14288834 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU77683
TTTGCATGATGAAATTAAGTTACATATTTATTGTCACATTGAAGAGGAACACAATATTCACAAAATAGGAAACAAGATCAAGTGTTCGACGGTAGGCCTTCACACAAATATGTACATCACAAGGCAGGTCTTAAAAAGTGtcggacatttttttttaaatttatatatatatatgtatacagagagagagagagagaaatagatagttttaaagttaaatatgataatacaatttaatccgttcaattaaataaagttcTATTATAGAATTATTTTCTAGGAATATCTTGGTCTTCACAAGGGGGAGGGACACAATTTACCTGCAACCAGAGGCAGGCCCTGCTCAGCCAGACAGGTATCCTGACCGCATACGGCAAAACACTCACTAAGGGGCCATTCCACTACAGTCACGACAGCTGAAGCCTGCCATTGCTCTGACCACCgcaaaacaacatatttatcagatacctttatttaaaagtaaagttGTAATTGGTCTTGAAGCCGCTGTCAAAATAAGGTCATAACAAAAGTCTCAGCTTAAAACTAAAGGACAGTATCAGAAAGCTAATGGTAATACAGCAATGATGCActaaagttgtttttcttttgtctgtgtttttttgacgattcaaaaaaacatttgattttctaTCCTTTACACTGGTACCTGCATCAAAGATTCCTTGATACACAGACTTGCGGAGAGTGCTTTCAATGCTTTCACAGTTGACAATCTAAAAAATGatcataatttatatatattttttaaagtccaCTTTACTCATTCAATGCCATAAAGGAAGCTACACTAAATTGCCAGcagcaaataaaacacaaaagaaacagaatgaAGCATAATTTCAACATGGAATGTAGTAGTGTTTCTGACATGTGTAAAAGAAACGGGTCAGAGTTTCTTgtttgataaataataaaaaaagacatcaaCAGAGCTGGTGTTCCCAGTAGGGCAGAGAGGAGGCATGCCAGACCATGAAGGGCAAAGACAGGACTTCACACTCTGGTCCCTGCTAGCTGCGCCACACTCCTCATCGGCTGAGACCAGCCAGGATTTCCACACTGTTGTGCAATAACGCACTATCCtcagtgtgttgtgctgtgtaaTATCACACTGTCCTCTCAGTGTGTCTAGACCTCAGTCCTGCTGGGACTGAATGAAGCCCTTAAAGAATGGTGCTAAGCAGGTGTACAAGTGGGTCAGTGCTCGAGGGGGTGTGTGGACCCAGCCCTCCCTCAGACACTCAAGTGCCTTGCTTTACAGgagccactgtgtgtgtgtga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77683 True 1305 lncRNA 0.40 2 14241865 14288834

Neighbor

gene id symbol gene type direction distance location
AMCG00020268 LOC106594058 coding upstream 143216 14085133 ~ 14098649 (+)
AMCG00020266 NA coding upstream 186135 14052358 ~ 14055730 (+)
AMCG00020263 NA coding upstream 219538 14000227 ~ 14022327 (+)
AMCG00020264 fhod1,LOC107740454,LOC106562854,LOC107553095 coding upstream 246726 13988080 ~ 13995139 (+)
AMCG00020262 LOC108432357 coding upstream 266306 13973414 ~ 13975559 (+)
AMCG00020277 LOC102693979 coding downstream 5899 14294733 ~ 14302999 (+)
AMCG00020275 dus2,LOC108229071,LOC106942792 coding downstream 25558 14314392 ~ 14332409 (+)
AMCG00020276 NA coding downstream 51001 14339835 ~ 14383230 (+)
AMCG00020279 amfr,LOC107566269 coding downstream 150244 14439078 ~ 14450651 (+)
AMCG00020280 NA coding downstream 162941 14451775 ~ 14461301 (+)
G62014 NA non-coding upstream 104036 14137426 ~ 14137829 (+)
G62013 NA non-coding upstream 104929 14136420 ~ 14136936 (+)
G62012 NA non-coding upstream 105578 14135298 ~ 14136287 (+)
G61904 NA non-coding upstream 311125 13877311 ~ 13930740 (+)
G61895 NA non-coding upstream 351437 13888151 ~ 13890428 (+)
G62062 NA non-coding downstream 56462 14345296 ~ 14401302 (+)
G62108 NA non-coding downstream 266022 14554856 ~ 14621700 (+)
G62114 NA non-coding downstream 277885 14566719 ~ 14567438 (+)
G62118 NA non-coding downstream 288673 14577507 ~ 14578702 (+)
G62185 NA non-coding downstream 743208 15032042 ~ 15034083 (+)
AMCG00020273 NA other upstream 9597 14195784 ~ 14232268 (+)
AMCG00020267 NA other upstream 290818 13948426 ~ 13951047 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other upstream 356749 13882825 ~ 13885116 (+)
AMCG00020255 NA other upstream 369220 13863477 ~ 13872645 (+)
G61894 NA other upstream 407033 13833170 ~ 13834832 (+)
AMCG00020281 slc12a4 other downstream 178966 14467800 ~ 14472545 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other downstream 2294052 16582886 ~ 16604658 (+)
G62632 NA other downstream 2525540 16814374 ~ 16815857 (+)
AMCG00020370 NA other downstream 3144808 17433642 ~ 17442711 (+)
AMCG00020371 nutf2 other downstream 3170310 17459144 ~ 17471869 (+)

Expression


Co-expression Network