G62191


Basic Information

Item Value
gene id G62191
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 15032135 ~ 15034076 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU77869
CTAGGTGCCAGTCCAGACTTGCCCAGACGTTGCCCGCTGACGAAGCTCCCATGTTTCACCCTTACTGGCGTGACCATGACCCTTCTCTGCCTCTTCCTTTTGACCTGAAGACCATCATACAAACTCTGGAGAGTCTTCTGTGAGACCCAGgcTTTGAAGAATGGCTGTGAAATAGTTTCCTGCAGCACGTGTGTCAGCCTAAATGGATTACTGAAGATAGGGATCTGATCGTCTGTCGCCACTTGCCTTTAGACAGTATCCATCAACGGGGACACGGCTGTGGCGATGGAggccaacacaaacacagcacttctttatttaatttttttacctTGAGCCAGATCTGCGAGTTTAGTTTGTGGATAAGCAGTTGAGTAACGAATGGCGGTACAAGTAgtgcattgtttgtttgttttatccccTTCAGatgaaatcatgaaaataaaacccacGGTCACCTGGCACGATTACTTCACAATGTCGTAAAATCCATGTCATGTTCTATCCATTGGTTAATCCTCGTGATGCAAGCATAATCAACCTTTTAAACATTGTTGTACTTTTAATTCTACTTCGTTAAATCTAAGGTATTTTTAATCAAGTGTTTTCTGTGGCCGATCAGAGTTTTGATACCACAGTGTTCTCAGTCTATACGATAAAACGACTCATTGCATTCTATGTTCATATGGAAGGGatgtttttaaaagctaaatCAGAAGATGATCCATAGCCGAGGTGGATTCTGGGTTGGTGTGGACATGTCATGTATTTGTAAAGTTTAATTTCAGACAGACAATGCTGGGAACCATACATGCTGAGCAGGTTAATCAGAGAAGGCTGTGCTTTTCATGATGTGGAGGAGCGTTCTTTCTGGAGTGCAACTATCACCTGTGGGCTGCGGTCtttgcttcatttatttatttagtgattaATGCCCTAATTTCTGTGCTGTTAGGTGGCTATCACCGCCTTGCATGTGTTCAGGAGTATGAGCCAGCGGTGATGTGGGGAGGTGTTTGTGCTCGCGGGGGAAACTTGCAACCTCTTTCCAGTGTGTAACAGTGATAAGAGTCAACCTTATCTCCACAGTGTAGACGAAATCCAATGCAGAACACATGCTTTTCATAATTACatctgttttgtcattttgaatGGCTTTTCAACTGTGTTTTTTGGTGTTGTACTTGAggcatttgtgattttttttaatgaatgtatttttttgtattgctgttttttttttttttatgtaatttgtaaacaTTATGAATCAAGGAGTGGTGGGATTTTAGCTGAATGTTTATGAAACCAATACTGTCAA

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU77869 True 1321 lncRNA 0.41 2 15032135 15034076

Neighbor

gene id symbol gene type direction distance location
AMCG00020290 irx5a,irx5 coding downstream 256927 14770984 ~ 14775208 (-)
AMCG00020289 irx6a,irx6,LOC107713056,LOC107755049 coding downstream 392766 14634566 ~ 14639369 (-)
AMCG00020286 NA coding downstream 453297 14564774 ~ 14578838 (-)
AMCG00020287 NA coding downstream 467494 14554864 ~ 14564641 (-)
AMCG00020288 slc6a2,LOC103378986 coding downstream 486192 14497234 ~ 14545943 (-)
AMCG00020294 NA coding upstream 80831 15114907 ~ 15128403 (-)
AMCG00020293 NA coding upstream 96583 15130659 ~ 15145083 (-)
AMCG00020300 NA coding upstream 212197 15246273 ~ 15265762 (-)
AMCG00020302 NA coding upstream 234993 15269069 ~ 15269426 (-)
AMCG00020301 chd9 coding upstream 236717 15270793 ~ 15307496 (-)
G62143 NA non-coding downstream 264572 14703511 ~ 14767563 (-)
G62066 NA non-coding downstream 630833 14345297 ~ 14401302 (-)
G61943 NA non-coding downstream 1117969 13913172 ~ 13914166 (-)
G61927 NA non-coding downstream 1208595 13821748 ~ 13823540 (-)
G61920 LOC107746475,LOC107567702,LOC107595988,LOC107697985 non-coding downstream 1239204 13789391 ~ 13792931 (-)
G62283 LOC107575789 non-coding upstream 389079 15423155 ~ 15423574 (-)
G62475 NA non-coding upstream 1446454 16480530 ~ 16480990 (-)
G62580 NA non-coding upstream 1634821 16668897 ~ 16669511 (-)
G62582 NA non-coding upstream 1645780 16679856 ~ 16680624 (-)
G62655 gnao1a,gnao1,LOC108264367,LOC108249535,LOC106925363,LOC103367675 non-coding upstream 1862794 16896870 ~ 16923733 (-)
G62061 NA other downstream 699728 14330522 ~ 14332407 (-)
G62011 NA other downstream 900566 14129678 ~ 14131569 (-)
AMCG00020249 NA other downstream 1197406 13824689 ~ 13834729 (-)
AMCG00020256 NA other downstream 1219132 13811413 ~ 13813003 (-)
AMCG00020252 atp6v1g1,LOC107566902,LOC108259956 other downstream 1223802 13805020 ~ 13808333 (-)
AMCG00020316 cnep1r1,tm188,LOC106587574,LOC107551481,LOC107554612 other upstream 1064824 16098900 ~ 16102739 (-)
G62409 NA other upstream 1084913 16118989 ~ 16120153 (-)
G62415 NA other upstream 1218712 16252788 ~ 16255119 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other upstream 1238375 16272451 ~ 16275573 (-)
AMCG00020336 NA other upstream 1582247 16616323 ~ 16624970 (-)

Expression


Co-expression Network