G62282 (LOC107575789)


Basic Information

Item Value
gene id G62282
gene name LOC107575789
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 15423207 ~ 15423573 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU77989
aatcagattccaaactctccaccatggccaagaccaaagagctgtccaaggatgtcagggacaagattgtagacctacacaaggctggaatgggctacaagaccatcgccaagcagcttggtgagaaggtgacaacagttggtgcgattattcacaaatggaagaaacacaaaataactgtcagtctgcctcggtctggggctccatgctaGATCTCACCTcatggagtttcaatgatcatgagaacggtgaggaatcagcccagaactacacaggaggatcttgttaatgatctcaaggcagctgggaccatagtcaccaagaaaacaattggtaacacactatgccgtgaaggactgaagtCCTG

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase zeta-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77989 True 367 lncRNA 0.47 1 15423207 15423573

Neighbor

gene id symbol gene type direction distance location
AMCG00020299 NA coding upstream 175587 15245022 ~ 15247620 (+)
AMCG00020297 aktip,LOC107713059 coding upstream 178223 15235683 ~ 15244984 (+)
AMCG00020295 NA coding upstream 205177 15212090 ~ 15218030 (+)
AMCG00020296 NA coding upstream 223915 15166014 ~ 15199292 (+)
AMCG00020298 NA coding upstream 257213 15160597 ~ 15165994 (+)
AMCG00020304 LOC106562398 coding downstream 19338 15442911 ~ 15496323 (+)
AMCG00020306 sall1,LOC106587587 coding downstream 336512 15760085 ~ 15770745 (+)
AMCG00020305 sall3,LOC106562315,LOC108274520 coding downstream 347442 15771015 ~ 15778141 (+)
AMCG00020307 NA coding downstream 478939 15902512 ~ 15908316 (+)
AMCG00020311 NA coding downstream 579857 16003430 ~ 16011619 (+)
G62275 NA non-coding upstream 88151 15333684 ~ 15335056 (+)
G62251 chd9,LOC106562403 non-coding upstream 125026 15297747 ~ 15298181 (+)
G62185 NA non-coding upstream 389124 15032042 ~ 15034083 (+)
G62108 NA non-coding upstream 801507 14554856 ~ 14621700 (+)
G62368 NA non-coding downstream 640522 16064095 ~ 16066816 (+)
G62398 NA non-coding downstream 675413 16098986 ~ 16100810 (+)
G62432 NA non-coding downstream 991905 16415478 ~ 16488182 (+)
G62480 NA non-coding downstream 1078211 16501784 ~ 16504823 (+)
G62494 NA non-coding downstream 1109783 16533356 ~ 16535401 (+)
AMCG00020281 slc12a4 other upstream 950662 14467800 ~ 14472545 (+)
AMCG00020273 NA other upstream 1190939 14195784 ~ 14232268 (+)
AMCG00020267 NA other upstream 1472160 13948426 ~ 13951047 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other upstream 1538091 13882825 ~ 13885116 (+)
AMCG00020255 NA other upstream 1550562 13863477 ~ 13872645 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other downstream 1159313 16582886 ~ 16604658 (+)
G62632 NA other downstream 1390801 16814374 ~ 16815857 (+)
AMCG00020370 NA other downstream 2010069 17433642 ~ 17442711 (+)
AMCG00020371 nutf2 other downstream 2035571 17459144 ~ 17471869 (+)
G62895 NA other downstream 2504755 17928328 ~ 17928904 (+)

Expression


Co-expression Network