G62368


Basic Information

Item Value
gene id G62368
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16064095 ~ 16066816 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU78095
cattttaatattgaaagaTACAATTTAAAGTTCAGTTTGATTTATGTCAGCCCAATAAACCCATGGGcttccacatttaaattaaagatttattaattgatatactcacaaaaaaatatagtCTGAAAAAGTTTTTATACTCTCCAAAAAATACAACTAGACCACAGGTAGATGAAAACAGACAGTGATTTGAACAGAAAAAGATCAGGAAAAAgttgaagatttaaaaaaagaaagaaaaagaacagctCAACTGTTCTTAACTTAATAAATAGAGATGTATTGTTCTAGACATTATGAAGTCGGGGTTTATATGTGAAGAAATCCCCACAAAGGGTTTCTTTCCATATAGCTTTCAATTTAAGTCTCAGCGGTTGGAAAAACTACACATCGGACCCCGTTCCTTATTGTACGTGCAGGCTCTCGCTTCAAATGCTGGTATGCGTTCTCATGAAACAGTCGACGACCCATTCAGACTAAACACATGGGAGCTATGAATCGGGGGTAATACTGCAGAGCGAAATCTTTGGGTGCATAAAGTTTGAAACAAACGATATTCATCATTTCAACTCGTGTCAAAACAATATTGTCTAACCTTTGCggagaagaataaaaacaaaaaaagatggaGCTAATCTCTTGGAGTTCTAGAACTGCATTGACAAGGTAGGAGCAGCAAACTGTACTGGAGAAATGAATGCACCTAACCCAGTCAGAGACAGATACATTCACAGCCAAGGACGAGAGGGGAAAACCCAGTGACCTGACAGAGACAAAGCTACTTTATACCAGCAATACCCCCTTGTTTCGGTTTTAGACATCGTTAGAAGTAAATACAACAGTtggagaaaaaacataattaaatcatggctgcaaaacatgaatattaatcATAGGTAGCAACAGTGGTACATAGAAACCCAGCTTCGCAACCCATTCCTGTCAGGCACTTCCTAATTAATGTCCGCTCATTCATTTAAGCAGTAATACATGGAGACTTATGTCAAATaccaaaacaagcaaaaaaaatcaGCTCATGAGAACTTCACTCACACAAAGATGGacccattttattttccagtgggAGAAACTGAACAGGCGATCTTGAACACAGCAACATTGTGAGGGGCTAGTAGACACAACCACCAACTGGCATGCAACAATGTAACCATGCTCCCACCGTCAGCTCCAACAGCGGAATTACAATCTATAGCAGCTGCACCAGAAATGACACGGGAGATTTTAGGATTTTCCCAGCAAACCTCATTCTCTTGGCCCAGCGCTAGATGTGCATTATTTAAGAAACACCTTTCAGATACAGAATAAAGAGGGATCAACTCACTGTACTAAAAAAAAGGCAGTAGGAAAGCAGGTGATTTAATAAACCAATTTGTTGGTATATAGTAAGTAGTGGATGTCTTTTAGATTGTTCTCCTGCGGTGTGCAAGAATGCAGTTTTATAGTAAACTACCATACAAAACCTTTCGGATGCAATATTCCTTTAGATATTTTAGTTGCTGAAATATGACcacaaatgcactttaaaaaaataaatacatttcccagTTATGTAATAATTgtacttgttttgattttattgcaTGTATCTTAACATATGTAGTAACTACATTTCAGGCAGATCAGTTTCAGTCCGGTTAATTAAATACTCTGTCTTTAGCAGTAAGAACTCCACATGGCACTGGTTAAAAAGCACttaaaaacagttttccatTGTGTTGTAGTGCCACCTGTGGCCAGGAGAAGAAGTGCAGCAAGAAGCTCATACTAACTTTCATACCATTTTAGATGCAATAGTAACAACCTGACACTCTGCTCCCAGCAGTTTCCTTTCTAAGTAAGGGAGTAGACCTGCCACACATGAAAGACGGagggtggggggaaaaaaaataacattcttcCAAAGACTAAAGTGGTCACTCTTTCTGAAGTCACTTGGTCACTCACTTATAGTTAACACCTTTGTACATTTAGGGGGAAATTAAGATAATTACCAGGTATTAAAGGACAGTAAACACTGAGCACAACAGTTTCTGTCTTTCTTGTAACTCGTAGAGTACACTCTCCACATCAGGATTCCCTGTTAAACACTGAGTAAGAAACCTGCtttcatattatatatgaaatatacaaGACAGTTTCCCACTTGCTTCTTTTGTTCAATTAACTCAATGTCACAGTCTGAAGTACTCGTTCAGTAtgtgaaaaaagtaataaaataccTAGCGATCTTGCCATGTTAAAGCAGAGGTCTGGGTGCAACCTGGCACACGGGGTCTGTCTGTCCTGAGCCACAGTGCCCAGACGCACAGCTGCAGCCGCCAGATACATTGGATGCTGATGATTGGAGTTGGCAATAGAAGTGGCGCTTGGCTTTTCAACTAGCAGTCAAAACTTACATCTTTAAAATCTCAAATTAGTTATCATGTAAAAGTAATActcaacatttttttgttgttggttttgttctttttttggtgtttttgtatttttttgtgtgttttgtatgtttttttgtataaatgtattttttatgaccgttatatatacataataaaaccaTAAATCCTATTGCAGACCCTCAACATAAAACTAAATCATGCTTATATTCCCATTCTTAAGGACAATTTCCTGTTTTGGatgttaaccttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78095 True 2676 lncRNA 0.37 2 16064095 16066816

Neighbor

gene id symbol gene type direction distance location
AMCG00020311 NA coding upstream 52476 16003430 ~ 16011619 (+)
AMCG00020307 NA coding upstream 155779 15902512 ~ 15908316 (+)
AMCG00020305 sall3,LOC106562315,LOC108274520 coding upstream 285954 15771015 ~ 15778141 (+)
AMCG00020306 sall1,LOC106587587 coding upstream 293350 15760085 ~ 15770745 (+)
AMCG00020304 LOC106562398 coding upstream 567772 15442911 ~ 15496323 (+)
AMCG00020315 NA coding downstream 37552 16104368 ~ 16112905 (+)
AMCG00020318 NA coding downstream 82504 16149320 ~ 16154632 (+)
AMCG00020314 znf423,si:ch211-216l23.1,LOC107738741 coding downstream 110792 16177608 ~ 16180913 (+)
AMCG00020319 si:ch211-216l23.1,znf423,LOC106533351,LOC107740334 coding downstream 165765 16232581 ~ 16236548 (+)
AMCG00020320 LOC106560866,LOC107738740,LOC107686280,LOC107549643 coding downstream 187677 16254493 ~ 16274574 (+)
G62282 LOC107575789 non-coding upstream 640522 15423207 ~ 15423573 (+)
G62275 NA non-coding upstream 729039 15333684 ~ 15335056 (+)
G62251 chd9,LOC106562403 non-coding upstream 765914 15297747 ~ 15298181 (+)
G62185 NA non-coding upstream 1030012 15032042 ~ 15034083 (+)
G62118 NA non-coding upstream 1485393 14577507 ~ 14578702 (+)
G62398 NA non-coding downstream 32170 16098986 ~ 16100810 (+)
G62432 NA non-coding downstream 348662 16415478 ~ 16488182 (+)
G62480 NA non-coding downstream 434968 16501784 ~ 16504823 (+)
G62494 NA non-coding downstream 466540 16533356 ~ 16535401 (+)
G62504 NA non-coding downstream 480920 16547736 ~ 16565189 (+)
AMCG00020281 slc12a4 other upstream 1591550 14467800 ~ 14472545 (+)
AMCG00020273 NA other upstream 1831827 14195784 ~ 14232268 (+)
AMCG00020267 NA other upstream 2113048 13948426 ~ 13951047 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other upstream 2178979 13882825 ~ 13885116 (+)
AMCG00020255 NA other upstream 2191450 13863477 ~ 13872645 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other downstream 516070 16582886 ~ 16604658 (+)
G62632 NA other downstream 747558 16814374 ~ 16815857 (+)
AMCG00020370 NA other downstream 1366826 17433642 ~ 17442711 (+)
AMCG00020371 nutf2 other downstream 1392328 17459144 ~ 17471869 (+)
G62895 NA other downstream 1861512 17928328 ~ 17928904 (+)

Expression


Co-expression Network