G62398


Basic Information

Item Value
gene id G62398
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16098986 ~ 16100810 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU78128
tagCAGTATAGGGGGTTAAGCAGCAGTCACAACACAcattatacaaaacaacaccttttaaaattaataccGCATTTATTGCAAGAGAtttgggaaacaaaataaatgaattgagattaaaaaaaaaaacatctgctaaGATTGCACTGtccaaaatcaaaatgtttagtTATTTGCCAGAGTACATACCACTGTAGAAGTaccaaaacaatgaaaaacaaacatatgacAGAGTTCTTCTAATCTTAAGAATGATGAAATTCTGATATGCAACTAAGATATGAGAATCTGAAATATGACATTCAAGaagataaacaaaaatgaactcATTTCCAGATCACTTTACAAGGTCTGTTTAAATTTCACCTTCAACAAACAGCTTTGACTGATCATCGGGCAGCAATGCTTGGGTATGCGTCACCCTGACAGAGAGTACATATCATCAGCActgtttgaattaatttaattaatcaaaatttaaaatattaacccACATATAATTTCTTACAGTGCAGAAATACCATgaagtcagttttttttttttttttaaaggatctCATACTGATTTTATTCCTTtacttaaatattaataaacaaatacaataataataaaatggcatACAGGCTTCACAGAAATGCCATAGTTCAAATTACCAATAGTGTCCTCAGTGTCAAAACAGTGCTCGATTATTTAACTAATCAACAACAAGCCCCTTTTAAACACTGACTTTTAAGCCTGTCGGGCTGCTATGAGAACACGCAGAAAGGTCACTGTGACCGTAAGACTCAGCTGGCACACGGCAACATGTGTCATGTggtcacagacacaaacagaatcTAGATCTCATCACTGGGTTCAAAGACATTTCcgtaccacacacacacacacacacacacacacacgcgcacacgcacacacacacacaaaagcaaaattaaaatatacaggtGAAAAAGGATGACATTCACAACCAAATGAGACAGTGGCTGTGGCAGGAAAATAGCAAGCATTTGCAAAGTCTgcacatcatatatatatatatatatatatatacacatttatagaagaaaaaatacaaaaaaatattctataGTTTTAAAGAGGAGTTCTCTGCAGACCGGCTCTTGTGAATGATGTCCAGGGAAACACCTTCAGTTTAGGGCTGTAATGGGCCCGACTGGTGGTGAATCTGACAGCACAGGAGAGGAAGCCAACCGTAGCAATGagatataaaacacacatcatGATATTTCCCTTTGAACTGGTTTAAAAGCTAAAAATCGTACACACGCCCCCCCGCACCGCGACGCAGCGGTGCCCCGGGTGATTTACAGTCACCGGAGAGACAAGGTCAACCCAGTATGAGAGACCGGGACCAGGGCTGCTTGGTCATACGGGTGCGTGAGTGTGACGCGTTTCACACACAGACGACAGCTTTTAAAGTGACACAGCCACACCGAAGCACGATGCGCACAGACATCGCTCCACGTGATCTTGTGATCCTCATGCTTAAAGAAACTGTACAAATCATTATTTACTAGcaacagtttttgttgttgtagttgttttgtttttatgcatccCTTCTTCCCCCCTCTTCCGTTACTCCCTTTGGAAATGACTTTCGAGGGTTTTCCGTCTGTGCACAGTTCATTAGGTAGAGACGGATCGTTCCTATGCAAAGCCATTTCACAGTGTGGGTCGGCATCCGCAGGAAAGGAAATGCGCTACTGGACGTGTGGCCGTGGCTTCAGAATGAGTTTCCCCGTCTGAAAAGACATTCAAGATTATGTTAGAGAGTCAA

Function

GO: NA

KEGG:

id description
ko04714 Thermogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU78128 True 1805 lncRNA 0.40 2 16098986 16100810

Neighbor

gene id symbol gene type direction distance location
AMCG00020311 NA coding upstream 87367 16003430 ~ 16011619 (+)
AMCG00020307 NA coding upstream 190670 15902512 ~ 15908316 (+)
AMCG00020305 sall3,LOC106562315,LOC108274520 coding upstream 320845 15771015 ~ 15778141 (+)
AMCG00020306 sall1,LOC106587587 coding upstream 328241 15760085 ~ 15770745 (+)
AMCG00020304 LOC106562398 coding upstream 602663 15442911 ~ 15496323 (+)
AMCG00020315 NA coding downstream 3558 16104368 ~ 16112905 (+)
AMCG00020318 NA coding downstream 48510 16149320 ~ 16154632 (+)
AMCG00020314 znf423,si:ch211-216l23.1,LOC107738741 coding downstream 76798 16177608 ~ 16180913 (+)
AMCG00020319 si:ch211-216l23.1,znf423,LOC106533351,LOC107740334 coding downstream 131771 16232581 ~ 16236548 (+)
AMCG00020320 LOC106560866,LOC107738740,LOC107686280,LOC107549643 coding downstream 153683 16254493 ~ 16274574 (+)
G62368 NA non-coding upstream 32170 16064095 ~ 16066816 (+)
G62282 LOC107575789 non-coding upstream 675413 15423207 ~ 15423573 (+)
G62275 NA non-coding upstream 763930 15333684 ~ 15335056 (+)
G62251 chd9,LOC106562403 non-coding upstream 800805 15297747 ~ 15298181 (+)
G62185 NA non-coding upstream 1064903 15032042 ~ 15034083 (+)
G62432 NA non-coding downstream 314668 16415478 ~ 16488182 (+)
G62480 NA non-coding downstream 400974 16501784 ~ 16504823 (+)
G62494 NA non-coding downstream 432546 16533356 ~ 16535401 (+)
G62504 NA non-coding downstream 446926 16547736 ~ 16565189 (+)
G62564 NA non-coding downstream 544128 16644938 ~ 16646261 (+)
AMCG00020281 slc12a4 other upstream 1626441 14467800 ~ 14472545 (+)
AMCG00020273 NA other upstream 1866718 14195784 ~ 14232268 (+)
AMCG00020267 NA other upstream 2147939 13948426 ~ 13951047 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other upstream 2213870 13882825 ~ 13885116 (+)
AMCG00020255 NA other upstream 2226341 13863477 ~ 13872645 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other downstream 482076 16582886 ~ 16604658 (+)
G62632 NA other downstream 713564 16814374 ~ 16815857 (+)
AMCG00020370 NA other downstream 1332832 17433642 ~ 17442711 (+)
AMCG00020371 nutf2 other downstream 1358334 17459144 ~ 17471869 (+)
G62895 NA other downstream 1827518 17928328 ~ 17928904 (+)

Expression


Co-expression Network