G62421 (LOC103138816,LOC103466733,LOC108251456)


Basic Information

Item Value
gene id G62421
gene name LOC103138816,LOC103466733,LOC108251456
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16272451 ~ 16275573 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU78161
AATTCAGAAGTGTTaatgaaaggttttattttccaagTACAACTGCAGCTACCCTAGAACAAGGCCCTTCTCGAACCAATCTTCTTGCCCATGCGTTATCAAACAACTCTTAATGAGAATAAAGCaaaaaactgattaaatggtTTCATTGTCCTGAAACAACCCCTTCCCTCccccaaaacaagaaaaaaatgtatttaaaacttttattacattatacaatcaataaaatattagttAAGGCAGACCAGCAACAGGTAACAGTGCTAAATCAGGATTAACAAATACAAGGCTGGTCTTCGACAATCTCatttaccaaaacaaacaaacaaacaaacaaacaaacaaaaacaataaaaactgaaaatgagcTGCTGGTactggttaaaaataataatttaaagctGTATTCTAGTGTGCAGATGCAATACCATTGTAACAAAAATAAGCAAAGTCTTGGCccttttttcttcagttattcGGCGGTTTAGGGTTAATGTAAcgcaaagaaaaagaaaatcggCTTGAACAGTAGTAGGGCAGAAACACGGAGGGTAAAGGGGCAAGCAGCGACGATTTCCCACTGATGCTGGCGCCACCCCGCTACCAGTCTTTTACTTTTGAACCATTCTGCTTCAAATGTCATTGCATGTGCTAAACGGCAAAGCGGTGATGGATCTGGAGAGCCCATCCTCCAGCGTGGAGTAGATCAGTTATAGTATAGCACTGAGCAGCGCagcagagggggaaaaaaaagatgagaaAAACGAAATGGTCAACTCACAACACAAGAGCAGCCAATAGCAGGGGGCGGGACGGCGCCAGGTGCCCCCCGATacgctctccctctccagcaGTTGCAGCTTTGCTTCGGAGTTTTTcgttcagtgtttatttatttattcttaaaccCTTTCAATGAAACGAGTCTTTCATTTCAATACTACAaacatctacaaaaaaaaaagaaagaccgCAGGGGTACAACTCTATTGaagattattgtgttttttgtatagtTCGACTGTGCCATGAAGGATATGTTGAACAGCGTAGTGTTGGCTGCCGAGCCCCGCGCAGGCAACTCTCCAGGCTGTGCTCCGTCtccgctctctctcctctcctctcctggtGGTCCATCATCTGCGAGATGCTGCCTGTGACCCCAGTCGGCAGGAAGGTCACGCCGGTCCTGAGGCTCCTCACTCCATTTTGTGCGCCCACTTCATGTCGTCGCTCCGAGGCTTGTGTCCGGTCACGGTTTCGATCAGACCCTCCATCCGCTGCCAGAAGCCCAGACAGTGCAGAGGGAAATTCAGCCAACCTGGTGATGCAGAAGTACGTCTCGTGGGGGGCGACGTGGTGGATGCGGTGGTGCTTGCGGGGCAGGATGATGTGGCAGTCCTGCAGCAGTGTGACCCAGCGTGGCAGCCCAAAGTACGAGTGCGACCACTTGTGGATCTGGTTGGTCATGGTGACGAAGATGGCCAGGGCGAACACGTAGCACTCCCAGGGGTACAGATCGGCCAGGGcctctgcaacacaacacacagagcagTCAGCGGGGAGAGCAGACACC

Function

NR:

description
PREDICTED: transmembrane protein 189-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78161 True 1579 TUCP 0.47 2 16272451 16275573

Neighbor

gene id symbol gene type direction distance location
AMCG00020317 NA coding downstream 174898 16088956 ~ 16097553 (-)
AMCG00020313 papd5 coding downstream 193746 16067413 ~ 16078705 (-)
AMCG00020312 NA coding downstream 235721 16012065 ~ 16036730 (-)
AMCG00020309 NA coding downstream 338773 15922293 ~ 15933678 (-)
AMCG00020308 NA coding downstream 370877 15893227 ~ 15901574 (-)
AMCG00020323 LOC107577405,LOC104961177 coding upstream 182006 16457579 ~ 16469287 (-)
AMCG00020325 lonp2 coding upstream 197011 16472584 ~ 16473662 (-)
AMCG00020324 NA coding upstream 198700 16474273 ~ 16479633 (-)
AMCG00020328 sf3b3 coding upstream 259123 16534696 ~ 16548548 (-)
AMCG00020329 NA coding upstream 282969 16558542 ~ 16569600 (-)
G62283 LOC107575789 non-coding downstream 848877 15423155 ~ 15423574 (-)
G62191 NA non-coding downstream 1238375 15032135 ~ 15034076 (-)
G62143 NA non-coding downstream 1504888 14703511 ~ 14767563 (-)
G62066 NA non-coding downstream 1871149 14345297 ~ 14401302 (-)
G61943 NA non-coding downstream 2358285 13913172 ~ 13914166 (-)
G62475 NA non-coding upstream 204957 16480530 ~ 16480990 (-)
G62580 NA non-coding upstream 393324 16668897 ~ 16669511 (-)
G62582 NA non-coding upstream 404283 16679856 ~ 16680624 (-)
G62655 gnao1a,gnao1,LOC108264367,LOC108249535,LOC106925363,LOC103367675 non-coding upstream 621297 16896870 ~ 16923733 (-)
G62659 NA non-coding upstream 711746 16987319 ~ 16989284 (-)
G62415 NA other downstream 17332 16252788 ~ 16255119 (-)
G62409 NA other downstream 152298 16118989 ~ 16120153 (-)
AMCG00020316 cnep1r1,tm188,LOC106587574,LOC107551481,LOC107554612 other downstream 169712 16098900 ~ 16102739 (-)
G62061 NA other downstream 1940044 14330522 ~ 14332407 (-)
G62011 NA other downstream 2140882 14129678 ~ 14131569 (-)
AMCG00020336 NA other upstream 340750 16616323 ~ 16624970 (-)
G62618 NA other upstream 517293 16792866 ~ 16793167 (-)
AMCG00020346 nup93,LOC103368977 other upstream 519423 16794996 ~ 16817767 (-)
G62853 necab2 other upstream 1335091 17610664 ~ 17626189 (-)
AMCG00020403 NA other upstream 1711608 17987181 ~ 18015862 (-)

Expression


Co-expression Network