G62432


Basic Information

Item Value
gene id G62432
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16415478 ~ 16488182 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU78174
ttacaggacttaaaggatctgctgctaacgtcttggtgccagataccacagcacaccttcagaggtctagtggagtccatgcctcgacgggtcagggctgttttggcggcaaaagggggacctacacaatattaggaaagtggtcataatgttatggctgatcNNNNNatatatatatatatatatatatatatcacacacacagtgaaagcAGTCTAAcaaactgcagtgctgtgtaagATAGTGGGTGAGTGATGCTGTTGGTGCATTGTAAGTGAGTCTGAGCTTGTGTGTACATATCTGTGTAATTCTGAATTAATTCTTACTTAATTTCTGATGTACAGCACCCCCCACAACATCCCCTCCAGCTTCAGCTCCACCATCCCAGTGTTCACTGCCTGACACACACTTCACAAATTATGTAGCTTTAAAGAGCCATCGGTAAGGGACCCAACTGGACAACTGTTATTTTGAATGCGCAACTGTCTATAGGAtaatattgtgttgtgtgtgtgtgtgtgtatgagagagagagaactaatTTTACATGTGAGTCAGAGAGAgatagtatttattttcctttattgtcTCTGTAAAAGCTTTGTGTAAATGTCATGCTAATAAGGCtagtttttaatagttttcaatgaaatatattattaaggGGGAGTAAGATGCTGTAGTTTCCCTCCTTTGATTATTGTGTAACTAAAAGTATCGTGTATGATTAACAACACCATTGTTACACTTGTATTATAGTGTAActagaatgtatatatatataaactggaGTTCTTTTTTCGGTGTATTGTTTGAGTGAGTGTAACAGcgatctttaaataaaataatatt
>TU78175
ttacaggacttaaaggatctgctgctaacgtcttggtgccagataccacagcacaccttcagaggtctagtggagtccatgcctcgacgggtcagggctgttttggcggcaaaagggggacctacacaatattaggaaagtggtcataatgttatggctgatcagtgtatatatatatatatatatatcacacacacagtgaaagcAGTCTAAcaaactgcagtgctgtgtaagATAGTGGGTGAGTGATGCTGTTGGTGCATTGTAAGTGAGTCTGAGCTTGTGTGTACATATCTGTGTAATTCTGAATTAATTCTTACTTAATTTCTGATGTACAGCACCCCCCACAACATCCCCTCCAGCTTCAGCTCCACCATCCCAGTGTTCACTGCCTGACACACACTTCACAAATTATGTAGCTTTAAAGAGCCATCGGTAAGGGACCCAACTGGACAACTGTTATTTTGAATGCGCAACTGTCTATAGGAtaatattgtgttgtgtgtgtgtgtgtgtatgagagagagagaactaatTTTACATGTGAGTCAGAGAGAgatagtatttattttcctttattgtcTCTGTAAAAGCTTTGTGTAAATGTCATGCTAATAAGGCtagtttttaatagttttcaatgaaatatattattaaggGGGAGTAAGATGCTGTAGTTTCCCTCCTTTGATTATTGTGTAACTAAAAGTATCGTGTATGATTAACAACACCATTGTTACACTTGTATTATAGTGTAActagaatgtatatatatataaactggaGTTCTTTTTTCGGTGTATTGTTTGAGTGAGTGTAACAGcgatctttaaataaaataatatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78174 True 852 lncRNA 0.37 2 16415478 16488182
TU78175 False 846 lncRNA 0.38 2 16415478 16488182

Neighbor

gene id symbol gene type direction distance location
AMCG00020321 cbln1,LOC106921425,LOC107090910,LOC106573707,LOC108250943 coding upstream 115493 16293494 ~ 16299985 (+)
AMCG00020320 LOC106560866,LOC107738740,LOC107686280,LOC107549643 coding upstream 140904 16254493 ~ 16274574 (+)
AMCG00020319 si:ch211-216l23.1,znf423,LOC106533351,LOC107740334 coding upstream 178930 16232581 ~ 16236548 (+)
AMCG00020314 znf423,si:ch211-216l23.1,LOC107738741 coding upstream 234565 16177608 ~ 16180913 (+)
AMCG00020318 NA coding upstream 260846 16149320 ~ 16154632 (+)
AMCG00020327 cog4,LOC107577202 coding downstream 61904 16550086 ~ 16557457 (+)
AMCG00020338 NA coding downstream 128234 16616416 ~ 16617243 (+)
AMCG00020330 NA coding downstream 145920 16634102 ~ 16640976 (+)
AMCG00020332 NA coding downstream 177960 16666142 ~ 16680624 (+)
AMCG00020341 bbs2 coding downstream 329401 16817583 ~ 16825446 (+)
G62398 NA non-coding upstream 314668 16098986 ~ 16100810 (+)
G62368 NA non-coding upstream 348662 16064095 ~ 16066816 (+)
G62282 LOC107575789 non-coding upstream 991905 15423207 ~ 15423573 (+)
G62275 NA non-coding upstream 1080422 15333684 ~ 15335056 (+)
G62251 chd9,LOC106562403 non-coding upstream 1117297 15297747 ~ 15298181 (+)
G62480 NA non-coding downstream 13602 16501784 ~ 16504823 (+)
G62494 NA non-coding downstream 45174 16533356 ~ 16535401 (+)
G62504 NA non-coding downstream 59554 16547736 ~ 16565189 (+)
G62564 NA non-coding downstream 156756 16644938 ~ 16646261 (+)
G62617 NA non-coding downstream 305482 16793664 ~ 16793880 (+)
AMCG00020281 slc12a4 other upstream 1942933 14467800 ~ 14472545 (+)
AMCG00020273 NA other upstream 2183210 14195784 ~ 14232268 (+)
AMCG00020267 NA other upstream 2464431 13948426 ~ 13951047 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other upstream 2530362 13882825 ~ 13885116 (+)
AMCG00020255 NA other upstream 2542833 13863477 ~ 13872645 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other downstream 94704 16582886 ~ 16604658 (+)
G62632 NA other downstream 326192 16814374 ~ 16815857 (+)
AMCG00020370 NA other downstream 945460 17433642 ~ 17442711 (+)
AMCG00020371 nutf2 other downstream 970962 17459144 ~ 17471869 (+)
G62895 NA other downstream 1440146 17928328 ~ 17928904 (+)

Expression


Co-expression Network