G62494


Basic Information

Item Value
gene id G62494
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 16533356 ~ 16535401 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU78248
TTACATTACACCGATTCTATATCTGACTTTTaacaaattgaaattaaaaaaataagacaaaacaaattaaacatgatccactcatacaaagcatattcataataaactatgCACAGTGAAGAAAATTTAATttgtggacaatttcctatgtaCAACAGAAGGATAAATAGCGTTAAAGGTAcgatgtatattttatgattgtgattatgaatgtgaaatgaatctagcattttaattccatgtagcaccttAACATCCTGGTAATGAAGGAATGAGAGGGAGACacttatacaaattataaatgattGAAAGGCTGTTAGCTTAgtatattcgtatagttgtctTTTcgcttctgcttgtctacatgtgatctcacgtgtttttgtttttccaaaaggaagaaaaaaaatcggTCACAGTGAGACATTTCTAACCTGAATGGTAATGGAAATGTGCTAAACATTTTTCCTATCattggatcctactcccagctaaaAGTAAGTGTTAGAGATTTTATGATTAATTAGCTCCTGCTCTGAGGGAGAATTCATATTTCTCCTAAACTAACTTTTGGCATAATTCctaggagtaattctgagatgttttatgcatacaAGCCTTGAACAACACACCCACTAAGGCACAGtacaaaaaaacttttatttacaAGAAAGGTCATCTTTGCTCCAGCATCCCCACTGCTGATGCCACCATCTCTCACTGTACAGAACAGCAGTGACATCCCAACAACAAGGCTGGCAAGATCCATTACAAACCCCCCGTGACAAAAAGCAATTTACACTTATTCAAAATTACAGGACCCATTTTCAGTTAGGACGTGGAAAGTTTGTACTGCGCACTAGATTTTGGGTAATTATCTATGTTGTTTTGATATCTGGATTTCAGCCAAATAGCTTTGCCTGAAAGCTTCCCAAAAGGACTTCAAGataagaactaaaaaaaaacaacatttagtTTTGCATTGGACCTCTTCCAAGTCTGGGTGACATCATAAAaggaggggaggggtgggggaagttaaatacaaaaaaaaaaatttctacacaacaaaacaggaaTAACAGGGTGAGGTTGCCCACGGGAAAAGACTGGGAGATACAAAATGCCAAGCTCCGCCAATTAGAGGAACCAGAGTCACTTCGGACAGGAAAGACAGTCGGCAGAACAAACACTGGCAACCAGGCAGCCATTTCCTGTCCCCAGGTGCCAAGAGAACTCTGCAAGCTGCCTTTTTGGGGGGTGCAAAGCACTAGCAGGCATCCTCTCCCTCGGTTGTCTCGTGCTCTCAAGCTGTGCTGATCTGCGCCACCCTGTGATCACTAGAAGGCATAGCGTGTACGGATGTCCTCCAGTTTCTTGGAGACCTCAGGGGGTGTCCTGTCCAGCTCTGCCGATACACTCTTCTGCTTGTTGGGGTCCATGGAGTTGAACTGCTCACACAGGTCCCCGTCAATAACGTTCTGACAGGGAAGTAGTAGGACCGGAAGCTAAGGTGGTCCCGCCCACACAAGGGGGGGAACTCTGAACGCATGTGCATCTCCAAGTGCTGGAAGAAATCGTGGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78248 True 1585 lncRNA 0.41 2 16533356 16535401

Neighbor

gene id symbol gene type direction distance location
AMCG00020326 siah1,LOC106573709 coding upstream 80721 16450836 ~ 16452635 (+)
AMCG00020322 NA coding upstream 99299 16420323 ~ 16434057 (+)
AMCG00020321 cbln1,LOC106921425,LOC107090910,LOC106573707,LOC108250943 coding upstream 233371 16293494 ~ 16299985 (+)
AMCG00020320 LOC106560866,LOC107738740,LOC107686280,LOC107549643 coding upstream 258782 16254493 ~ 16274574 (+)
AMCG00020319 si:ch211-216l23.1,znf423,LOC106533351,LOC107740334 coding upstream 296808 16232581 ~ 16236548 (+)
AMCG00020327 cog4,LOC107577202 coding downstream 14685 16550086 ~ 16557457 (+)
AMCG00020338 NA coding downstream 81015 16616416 ~ 16617243 (+)
AMCG00020330 NA coding downstream 98701 16634102 ~ 16640976 (+)
AMCG00020332 NA coding downstream 130741 16666142 ~ 16680624 (+)
AMCG00020341 bbs2 coding downstream 282182 16817583 ~ 16825446 (+)
G62480 NA non-coding upstream 28533 16501784 ~ 16504823 (+)
G62432 NA non-coding upstream 45174 16415478 ~ 16488182 (+)
G62398 NA non-coding upstream 432546 16098986 ~ 16100810 (+)
G62368 NA non-coding upstream 466540 16064095 ~ 16066816 (+)
G62282 LOC107575789 non-coding upstream 1109783 15423207 ~ 15423573 (+)
G62504 NA non-coding downstream 12335 16547736 ~ 16565189 (+)
G62564 NA non-coding downstream 109537 16644938 ~ 16646261 (+)
G62617 NA non-coding downstream 258263 16793664 ~ 16793880 (+)
G62654 NA non-coding downstream 451918 16987319 ~ 16989579 (+)
G62681 nudt21 non-coding downstream 494792 17030193 ~ 17046150 (+)
AMCG00020281 slc12a4 other upstream 2060811 14467800 ~ 14472545 (+)
AMCG00020273 NA other upstream 2301088 14195784 ~ 14232268 (+)
AMCG00020267 NA other upstream 2582309 13948426 ~ 13951047 (+)
AMCG00020241 cdc26,LOC107743800,LOC107691734,LOC107603191 other upstream 2648240 13882825 ~ 13885116 (+)
AMCG00020255 NA other upstream 2660711 13863477 ~ 13872645 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other downstream 47485 16582886 ~ 16604658 (+)
G62632 NA other downstream 278973 16814374 ~ 16815857 (+)
AMCG00020370 NA other downstream 898241 17433642 ~ 17442711 (+)
AMCG00020371 nutf2 other downstream 923743 17459144 ~ 17471869 (+)
G62895 NA other downstream 1392927 17928328 ~ 17928904 (+)

Expression


Co-expression Network