Gene
RNA
| Item | Value |
|---|---|
| gene id | G62681 |
| gene name | nudt21 |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030127.1 |
| NCBI id | CM030127.1 |
| chromosome length | 42978078 |
| location | 17030193 ~ 17046150 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| nudt21 | Predicted to enable identical protein binding activity and mRNA 3'-UTR AU-rich region binding activity. Predicted to be involved in several processes, including positive regulation of cell differentiation; protein-containing complex assembly; and regulation of mRNA metabolic process. Predicted to act upstream of or within cell differentiation and mRNA polyadenylation. Predicted to be located in cytoplasm and paraspeckles. Predicted to be part of mRNA cleavage factor complex. Orthologous to human NUDT21 (nudix hydrolase 21). |
| description |
|---|
| PREDICTED: cleavage and polyadenylation specificity factor subunit 5 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU78471 | True | 775 | lncRNA | 0.44 | 2 | 17030193 | 17046150 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00020353 | hsf4,LOC106560841,LOC106573731 | coding | upstream | 10916 | 17003918 ~ 17019277 (+) |
| AMCG00020350 | gnao1a,LOC100693875,LOC105926579,LOC108264367,LOC103138895,LOC106939917 | coding | upstream | 43052 | 16984587 ~ 16987141 (+) |
| AMCG00020351 | gnao1,LOC103367675,LOC108264367 | coding | upstream | 50533 | 16966271 ~ 16979660 (+) |
| AMCG00020352 | NA | coding | upstream | 105712 | 16897017 ~ 16924481 (+) |
| AMCG00020349 | NA | coding | upstream | 201827 | 16827119 ~ 16828366 (+) |
| AMCG00020360 | tmem170a | coding | downstream | 123841 | 17169991 ~ 17174708 (+) |
| AMCG00020362 | NA | coding | downstream | 130364 | 17176514 ~ 17179026 (+) |
| AMCG00020361 | NA | coding | downstream | 134791 | 17180941 ~ 17189251 (+) |
| AMCG00020365 | NA | coding | downstream | 191658 | 17237808 ~ 17258957 (+) |
| AMCG00020364 | NA | coding | downstream | 215532 | 17261682 ~ 17271532 (+) |
| G62654 | NA | non-coding | upstream | 40614 | 16987319 ~ 16989579 (+) |
| G62617 | NA | non-coding | upstream | 236313 | 16793664 ~ 16793880 (+) |
| G62564 | NA | non-coding | upstream | 383932 | 16644938 ~ 16646261 (+) |
| G62504 | NA | non-coding | upstream | 465004 | 16547736 ~ 16565189 (+) |
| G62494 | NA | non-coding | upstream | 494792 | 16533356 ~ 16535401 (+) |
| G62781 | NA | non-coding | downstream | 358235 | 17404385 ~ 17503263 (+) |
| G62909 | NA | non-coding | downstream | 908173 | 17954323 ~ 17955274 (+) |
| G62912 | NA | non-coding | downstream | 934883 | 17981033 ~ 17983521 (+) |
| G62916 | NA | non-coding | downstream | 941698 | 17987848 ~ 18032139 (+) |
| G62975 | NA | non-coding | downstream | 1088843 | 18134993 ~ 18138267 (+) |
| G62632 | NA | other | upstream | 214336 | 16814374 ~ 16815857 (+) |
| AMCG00020331 | st3gal2,LOC107686287,LOC106573711,LOC107672232 | other | upstream | 425535 | 16582886 ~ 16604658 (+) |
| AMCG00020281 | slc12a4 | other | upstream | 2557648 | 14467800 ~ 14472545 (+) |
| AMCG00020273 | NA | other | upstream | 2797925 | 14195784 ~ 14232268 (+) |
| AMCG00020267 | NA | other | upstream | 3079146 | 13948426 ~ 13951047 (+) |
| AMCG00020370 | NA | other | downstream | 387492 | 17433642 ~ 17442711 (+) |
| AMCG00020371 | nutf2 | other | downstream | 412994 | 17459144 ~ 17471869 (+) |
| G62895 | NA | other | downstream | 882178 | 17928328 ~ 17928904 (+) |
| AMCG00020408 | NA | other | downstream | 1012408 | 18058558 ~ 18065789 (+) |
| AMCG00020407 | NA | other | downstream | 1021637 | 18067787 ~ 18072051 (+) |
