G62770 (pard6a,LOC108250860,LOC106523998,LOC107101591)


Basic Information

Item Value
gene id G62770
gene name pard6a,LOC108250860,LOC106523998,LOC107101591
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17364823 ~ 17370446 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU78578
cgTATTGGTGTACTTAATTTTGGTGCACTTAggacaacatttttaaaagttaagaAAGCTTTGTTCGGAATGACTGCAAAGCAAAATATCTGACCAGAAAAGTTGTTAGTAAAGTGTGCAGGATCGGCTGTAAGATCTGGAATTTCAAATCTCTTCAAAAGGTCCCAGTACTGGGCAGTATTTGAGAGTGTGTTGGGGGCTAATAAAACAGGGCTGGCATCAATATCAGCTCACAGcagtacacaacacacactagGGTGCTTAACAACATATAACCCTCTCAGCAGTTTAGTGCACTTTATCATAGATTACCATCAATTCTGAAAAGAAAGACTTGCAAAAAcagcactttatttttaacttttaatttaatttttttatcctCTTcagataatattttataatcagcatacatttatataacattCACAGTATTGTACACCCGACCCCTccctttcaatttaaataatataaatacaaagctccactaatttcattttttttccaggtaGTCAAGAAATAGGAAGCAAAGGTCATTTTCAGGATTCTCATATACAAAAAAGTacaagaataagaaaaatactgtccatagttttatttatttatatatatatataaaatgttctgttaTACAAAAATCTCCCAAGTTAATAAAAACGTCCCTtcttttgctatttatttatacatatacaatgaGAGCATAActagaaaatattttgttcattacATGATGTAGTGATAAATACAAGTTGTTGTATGTGGTTTTCTGTGGGTTACAAGGAAAGTGTCTCTGTGGCCCCGGAGTGAAGATTTAGGGCACCCCAGAAATCACTTCgctttttgtaatgtattaatttatatggaAACATATGGCATATAACTCCAGAGTCTCCACTGTGCATAACCTGTGTGCTTATAAGTGTTTCTTTTATGTTATTTCCAAATCCCAAGAGTACTGTGGGCATGCGGctcctgcgtgtgtgtgtgtatgtgttggagGAGAGAGTGAGTTAGTGAGTATGTTTTTAAGCATTACTGACAGAAAGCAGAATTCTGTCGGTGACACTAACGAGGATGATACCACTCCTATTTGGCTTCCCTCTACAATAGTgaactttgaaaaaaaaaagacataaatacataaataattaaaacactgctAAAACGCATTCATTgtggaaaaaagaaagtaatCTAAAACTAGACCTTGCCAAACCCCGTTCTGCAGATCCTGCTTGCTGCAGATCAGGGGCTGGGTTCTGCTCTGCTTGGCCTGACTATAGGAGGACTCAGAGCGTCCATGGCGCCCAACAGCAAGAAGGCATCCCTTAGTTGGTTGACAATAAACCAGTGGCATGGCTCAGTTTTTTGGAAAAATAGATGGGGGAGTAGGGGGGTAACACACCTGGTCTGCTGTTATGGGAGAAGAATCTTAAGAGCTCTGTGCTGCGCCACAAGGATCTGCCCCTGCGTGTCCCCTCGGGCAGACAGAGAGTCCGAAGTGTGCTTTTCTTGTTCCTGGTATGCAGGTGTCGGGCTGCTACTCCTGTTAGTGGAGTCTGTGTGTCCGGCCCCAGAGGTCTGTCTGCCGTTGTCCCAGCCCACCTGTGACCTGTGTGTCAAGCACGGCGTGACTGTGTACTGATGCTGTGCCCAGCCACTCTCTATACTAAAAAAGACTGCGTGGAGTCTGGCACCAGGAGAGCAGTCAGCGCTGACCAAGTGCGTCCCCCTCCCCACAAGGAGCTGTTCATCGCCAAGCCAGGACTGCAACACTTGTCACCTGCAGCACATCCATCTCGCCTTGACACTTTGCTCCAGCGGCAGCTGTGGTTGCTGCTGTAAACACTACTACGTTTGATGGAATCACATCCTCCAAATTGCCTCCATTTGCCAAGGGGAAGCACTGAGGCTGGGTCTGGCAGGGCACAGATCTGATACCCTGCCAGCTAGCCACCCAGGTTTCTAGTTGCAAAGcaattaaatatacttaaaaaaaaatgtaaaaggtaaAAACTCAGGGAAAaccaaatatgaattaaaaaataaaccaaatctAATTATGTTGTGCACCCTTCATCTTATGACTGATGCTGAATGATTACCCCAGTCATAGTGAGCAGAGCACTCAGGGGGGCCTTCTGGGGCGCCTGCTGATGCATTAGTGCAAGTGAAGTTCCTTCATTAATCTTTAACCAGACAGCGTAGCACCTTGTACACAGCACAAGGCTTGTCTTTTAGTGTCGGTAATGGACAGTAAGACCTGACTGAGAATGGGCAGTGCGCCTCTTCTCAGCCTGAGCGGTGGGAGCACTGGTAAAGCCGGCTGCAAGTGTGCAGCACAGATGCTAAGACAAGACTGCCATTGACGCATGTACACTgtacacatttctttttttagctgTGTTTTTAGACTAATTAGAAACGCTGTTCTGTTTGAAATCAGGGTAACTGCGTTGATAAACACACAGTATTCGCAATAGCAGTAAAAGTCTGGAGTCACTCCAATGTACATTATGAGTCTTTTCTTCTTCGATCagctctgtgcagtgtgtgggcaataatacatgttttgtacTTGTATCACATGCAGGAAGAGCCCTCCCAGACTGCACTTGTGCTTagcacagagaaaaaacaaaatccttcattattgttttcttcatatCCTAATACAGTGTCTTCGGCACAAACACACCCCAGTACCATCAGAGGAGGGGCTGCAACCTGAGAGTCTCAGCCCAAACTCGGTCGTACCTTTTTCCATGCTACAATATCACATTATCCgaaacataattaaaagaaaatcaaataacatttaaataaaaagaaagtctcTCCTCACTGGGCctaaaaacccaaacaaacagtGTCTGACTTACTTTCATAACAGAACAAACTCAGAGACACAAGTACCAGAGAATTACTAAGAGTTATTGTACAGAAGGTGCCTGTGAATTGAGGGGTCTGTGGTCAGCCTGGAACCCGAATGGACGGGTTTTACAGGCATTATCAAGCTGGCGTGTTGTGTTCACAAATGTGGACAAGGCATTtagagacaaaaaacaaacaaacataagatAAAGAAAGAAGACTAATCTGACTTCCCCTAAATATTTGTGTGATAAAACCGTGTGGTGACAGCAGATGAGAGAAGCATCAGGTTTCTCTGTGCAAGTTActgaaataacacaataaagattagtggttaaaatattaaatacaattaaaacatccaACATGGCAGATGGCCCTCTGCAGAGCCTGACAGACTGCACAGAAAACAGCAGTAATTATTTGATGAAGTTTGAAGTTCTCcccattttttttaagtcaggAAATCGCTTGATAGGGATATTATGGATGTTGTATAATTGATGAAGCCACTTCCATCACTGTGATCTGACACTGCATCAGCTGATGTGTGCcgggggaggcgggggggcaGTGGAGGCAGAGGGCTGATAGCGCTTACTCACTGTGCCTCAGCGACAGAACCAAGCCAGAGAGATCCCAGGCTGGTAGCCGACATTTTGGAAAAGGcacaaaaaaccaacaacaaatgTAAAGGAAGTGGGATACAAACATTACTGCCCGCAGTGATGGACAGAGTTTGCAGGAATAGTGACGATcgtgcctgtgtgtttgtgttggcgTTACTTTGCCTTCTCTGTGTGGCTGGGGTGCAGttgttttgctgtgttgctTTCTGGTTGTTTTGTAAGTACACCAGGGAAAGCTGAACCACCCAGTCTGACAGCTGAAGACACAAGGAATGTGTGGCCCTGCGCAGCACTGCTCAGAGCCACAGACAGCTGTGGGTACAGTGAGTGTTGGATGGCCCTGTAGAGACGTCCTTGCGTTCACACAGGGGGTTAAACTTgggtaattatttaataatgtgtcGAGAAGCGGCTTCCTTGCCTCAGGAATGCTAACTTGATGCTCCAGTAAGAggcttttaataaaaacacattaaaaacaaaataataaatataggttgaaaaacatatttaaagaagGTAGGGACAGGCAATTAAAGACAGTACAGCTGAAGTTACCCTCAGGCTGCATGCACGTGTGTATTATTTTGACTTAGAGGGCATTAAGGTGTGACCTCATGTCAGGGAAATAGAATGGGATTGTGGGTATTGTGTTAATGCTGCAGGAATCGCTGCTGCTTCCTGTCCTGCGCGGTCAGCCATCATATTCTATCTGTGCGTTTGTTCAGTCAGAGTTTAGGTTGTGTCGTATTAGGCATGTGCGGCAAACCAGTTGCTTAAAAGGGTTTTTTCCAGTGCTTGGAATGTCCAATCTCAGAAGAGTACCAGACTGGCTCGGCTGAACAATATCATAAATGAAGAAAGCAAGGCTAGCATAGGGAACTCAAGGCACCTCTGTACAGTAACCAACAACTTTGCTGCAGCAGCTTTTAGGGTCCAAGAGAAGGAGAGCCCCCAGGCTGCGGAATCAGTTTCCAAGAGTTTTAGATGCAGGAACAACATCTGGGCACTTTTAGACCAAAAAAAACCTAGTGATTCTAGTGATGTTTTTCTTGTAactattgtcattattatttgtatgtttgttataGAAATGAGGTATTAGATTATAAAAAGTGGAAATAATCAAGGGTAGAAGAATCCTATTTGAGTTTTAGTCCCCCAAGGTTACATTTTGTACGAATTCTAAGGAAACTAACAACATCCCTTCCATGgatctctgttttgtttcttcctaGCTACAGTCCCCACCACCCTCTTCCCCATCAGTGGGGCGGTGTGTGTGGGGGATTTACAGTGTGATGACATTGCCGTCCTCGCGCATGCTCTCCTGGCTGATGCTGGTTTTGCTGGGGCTGCCATTGTGCGTGTTGAGTGAGCTGAGCGAGTTCTTGCTGTCGGAGAGCAAGCTGTGCAGGGAGGTGCTGGGCTGCATGTGTCTCGTCATGCCAGCCTGGTCCCCGTTGAGGAAGTCGGATGGCAGGTAGGGCGGCAAGCTGTCGCTTTCGATAATGAGATCGCCGTCCTCGTCGCTCTCGCCCTCTGCCGTGCTGTAGTTACTGAAGTACTGGGAGGCCGGGCTGGGCGTGCTGTCGTTGGAGAAGCCCGAGCTGCCCGACGCCTTGCTGCTGCGCACCACATTGTTGCGCTGGTTGGCCGGCTTGACGGTGATGATGAGGTTGTGGCTGTTGGCCACCATCATATCTGTGACCTGGTCCAGGGACTTGCCCACCACGTCAATGCCATTCACCTCCAGAATTTCATCGTTCACTCCCAGCAGCCCCGTGCTATCCGCCAGCCCGCCCTTCACCAGCCTCGAGATAAACACGCCCGGCACCTTCTCCACGCCCTGGCGCgtcacacgcacactcacaccaTCCCGGATGTAGAAGCCCAGTGGCTTGTCCGAACCGTGCTTGTGCAGCCGCACACGTCGGTGCGTCTCGGGCAGTATGTCCACGTCAATGATGGAGGAGATCTGCCGGAAGTCCTGAGGCAGCCCGATCATCAGGTGCGGCTTGCTCTTCTGCTGGGCTGGCCGCAGCCCAGGCAGCCCCTTCTTCTTCCGCTGAAGGGAGTTGGT

Function

symbol description
pard6a Predicted to enable protein kinase C binding activity. Acts upstream of or within neural tube formation. Located in apical plasma membrane. Orthologous to human PARD6A (par-6 family cell polarity regulator alpha).

NR:

description
PREDICTED: partitioning defective 6 homolog alpha-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78578 True 5586 lncRNA 0.45 2 17364823 17370446

Neighbor

gene id symbol gene type direction distance location
AMCG00020367 NA coding downstream 39292 17317097 ~ 17325531 (-)
AMCG00020363 NA coding downstream 225054 17138662 ~ 17139769 (-)
AMCG00020359 NA coding downstream 290581 17072789 ~ 17074242 (-)
AMCG00020354 NA coding downstream 307581 17049350 ~ 17057242 (-)
AMCG00020355 nudt21,LOC107660760,LOC107690386,LOC107721012 coding downstream 332711 17028087 ~ 17032112 (-)
AMCG00020372 NA coding upstream 22111 17392557 ~ 17402108 (-)
AMCG00020374 ranbp10,LOC106560827 coding upstream 38108 17408554 ~ 17415648 (-)
AMCG00020375 ranbp10,LOC107726299,LOC107694918,LOC107733562 coding upstream 54865 17425311 ~ 17432646 (-)
AMCG00020373 NA coding upstream 73039 17443485 ~ 17451798 (-)
AMCG00020382 NA coding upstream 179305 17549751 ~ 17559095 (-)
G62715 NA non-coding downstream 188988 17120154 ~ 17175835 (-)
G62675 NA non-coding downstream 345271 17018790 ~ 17019552 (-)
G62660 NA non-coding downstream 374109 16990267 ~ 16990714 (-)
G62659 NA non-coding downstream 375539 16987319 ~ 16989284 (-)
G62655 gnao1a,gnao1,LOC108264367,LOC108249535,LOC106925363,LOC103367675 non-coding downstream 441090 16896870 ~ 16923733 (-)
G62880 NA non-coding upstream 477712 17848158 ~ 17851113 (-)
G62951 cnot1 non-coding upstream 597787 17968233 ~ 17969691 (-)
G62981 NA non-coding upstream 767034 18137480 ~ 18138298 (-)
G63015 NA non-coding upstream 813562 18184008 ~ 18186050 (-)
G63057 NA non-coding upstream 987379 18357825 ~ 18358910 (-)
AMCG00020346 nup93,LOC103368977 other downstream 547056 16794996 ~ 16817767 (-)
G62618 NA other downstream 571656 16792866 ~ 16793167 (-)
AMCG00020336 NA other downstream 739853 16616323 ~ 16624970 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other downstream 1089250 16272451 ~ 16275573 (-)
G62415 NA other downstream 1109704 16252788 ~ 16255119 (-)
G62853 necab2 other upstream 240218 17610664 ~ 17626189 (-)
AMCG00020403 NA other upstream 616735 17987181 ~ 18015862 (-)
G62961 NA other upstream 635722 18006168 ~ 18039960 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other upstream 2918124 20288570 ~ 20299843 (-)
G63464 NA other upstream 3941756 21312202 ~ 21312605 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_013416 pard6a coding NC_007129.7 CM002902.2 22028674 ~ 22094102 (-)