G62853 (necab2)


Basic Information

Item Value
gene id G62853
gene name necab2
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17610664 ~ 17626189 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU78680
CTGGGAGGCAGTACGCGTGAACCTAGCAGCTTGGGATTGACAGGAACGCTAATGCCTATCTACTGAGCACCAATCCACCATCCTCCTCAGCATTGCACAGCTTTTCTGCAGagaataaatcacatttaacaaCCTGCAGTCTCTGTACCTGGTTCGCCAAGAGATGACCGTATCCCAGAAGCACCTGGGGGAGTTCTGCGATGCCCTGAAACAGTACCTGAAGAATGTGTCCACCCAGCGCGACTGCTTCCACGTCACCGCAGTGAGACTTCCAGATGGTATCAGCTTTGTCGTTTATGAGTTTtgggaaggagaggaggaatGGAAGAGGCATCTCCAGAGCGTGCCCTGCAAGGTGTTCCAGCATGTGAAAGTGGACACGCTGTGCCAGCCTGAGGCCCTGTCCACTGTGGCCGTGCCATCGGCCTGGTGTAGCCTGAACAGGGACTGACTCGAGCTGGAACTCCCCTCACAGACGACCCCCAGCTGCTGTCTGCAGAGCCTGCTCTCCGGTCTCTGTTCACTGAATACTCTCCCCCAAGGCAGAGGATTTTCTCGCATCTTTTTGTAATGACttgtttacaaacagtgtctgttAGATACTTAACTGAGCACACCGCAGGGAATGCTGGGTCTGTGAGGGCTTTGTCATATTTCTGTCaaagtgaaggaaaacaaaaaaaaacatatatccCACCAATCTGGACTGAGAGCAACTCTGAGCCACAACAATGGCAAATGCAGGAAACTTTTCAACAGTCTTACCTAAACTTAACACCGGCTCAATCAGTCTATCCTTCGTGGAACGGCACActttatatgaatgtatatacagtgctttaaaaacaactaatatAGAATATCTATAGAAAACGTACTGTTTTGATTTGCATCTTCTTTAGGAGCCCAGTGAGGTCACTTGTTGCTTTCTCTTTAGGTTTTCTATGGAGTGAATAAATAGCTCACGCTAGACTTACACCTTCTTATATTAACAGTGTCTGGTACTCGATCTATGGAGGTCAGAAAAACAAgctaacaaagaaaaaagtattatcTCTGTTGTAGCAGGCTGATTAAAATCAGTTGATAGTGTCTTAGTTAAAGGTTCATTTTCTGCTCTTATAAAGTTCCCTATTCTTTGCATATTAGATACTAGGGAATTATTGGCCTTGGTCAGGTGCAAAACCTTTTATTGAATTTTACAGAACCCATTGTTCCAAATgttggttttaaaatatcatagatattgtttttgttttctccaagtAAATATTATTGCAGATAGCTgctgtgtgtgaacagtgtaATCTCACCTGGTTTTGCTTTCCTTCACTTTATGGCAAGTGCATGTAGTCTGGACGTCCAGTAACTTATTTGCAGTAGAAATTAGCTGTGCTACTTTAAATGGTTTTTGtgcatttcttatgttcttttataATCCTACAAATGACTGGATAGACGAGAAAAAAAGATGGAGAATGAGTCTGCAAAGTCACTTTTATGGCATTGTTTGATTATATACTACTTCTTATAATTCTGTATGTTTCAGTAAACTTCCTATCTCTCTTTAACTCTGGGAATAGAGAGGGCGGGGATGCAAGTATTATATTCCGTCTGAAAGTAGGTTACTTATCGCTCATGTACAGTAAAGGTACTATGAAACAATAaaacttgaagaaaaaaa

Function

symbol description
necab2 Predicted to enable calcium ion binding activity. Predicted to be involved in regulation of amyloid precursor protein biosynthetic process. Predicted to be active in cytoplasm. Is expressed in brain; central nervous system; cranial ganglion; and neurons. Orthologous to human NECAB2 (N-terminal EF-hand calcium binding protein 2).

NR:

description
PREDICTED: N-terminal EF-hand calcium-binding protein 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78680 True 1684 TUCP 0.42 5 17610664 17626189

Neighbor

gene id symbol gene type direction distance location
AMCG00020382 NA coding downstream 51569 17549751 ~ 17559095 (-)
AMCG00020373 NA coding downstream 158866 17443485 ~ 17451798 (-)
AMCG00020375 ranbp10,LOC107726299,LOC107694918,LOC107733562 coding downstream 178018 17425311 ~ 17432646 (-)
AMCG00020374 ranbp10,LOC106560827 coding downstream 195016 17408554 ~ 17415648 (-)
AMCG00020372 NA coding downstream 208556 17392557 ~ 17402108 (-)
AMCG00020385 necab2,LOC106936069 coding upstream 33672 17659861 ~ 17673675 (-)
AMCG00020392 NA coding upstream 81924 17708113 ~ 17761880 (-)
AMCG00020391 NA coding upstream 149795 17775984 ~ 17794499 (-)
AMCG00020390 NA coding upstream 179342 17805531 ~ 17810647 (-)
AMCG00020389 NA coding upstream 187126 17813315 ~ 17816888 (-)
G62770 pard6a,LOC108250860,LOC106523998,LOC107101591 non-coding downstream 240218 17364823 ~ 17370446 (-)
G62715 NA non-coding downstream 434829 17120154 ~ 17175835 (-)
G62675 NA non-coding downstream 591112 17018790 ~ 17019552 (-)
G62660 NA non-coding downstream 619950 16990267 ~ 16990714 (-)
G62659 NA non-coding downstream 621380 16987319 ~ 16989284 (-)
G62880 NA non-coding upstream 221969 17848158 ~ 17851113 (-)
G62951 cnot1 non-coding upstream 342044 17968233 ~ 17969691 (-)
G62981 NA non-coding upstream 511291 18137480 ~ 18138298 (-)
G63015 NA non-coding upstream 557819 18184008 ~ 18186050 (-)
G63057 NA non-coding upstream 731636 18357825 ~ 18358910 (-)
AMCG00020346 nup93,LOC103368977 other downstream 792897 16794996 ~ 16817767 (-)
G62618 NA other downstream 817497 16792866 ~ 16793167 (-)
AMCG00020336 NA other downstream 985694 16616323 ~ 16624970 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other downstream 1335091 16272451 ~ 16275573 (-)
G62415 NA other downstream 1355545 16252788 ~ 16255119 (-)
AMCG00020403 NA other upstream 360992 17987181 ~ 18015862 (-)
G62961 NA other upstream 379979 18006168 ~ 18039960 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other upstream 2662381 20288570 ~ 20299843 (-)
G63464 NA other upstream 3686013 21312202 ~ 21312605 (-)
AMCG00020471 NA other upstream 4504653 22130842 ~ 22132737 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location