G62880


Basic Information

Item Value
gene id G62880
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17848158 ~ 17851113 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU78718
TGTgatctttatattatttttattttagattaattattataataaaatacattctgtgCTGGTACAAGCTATTAGCAAAGAAAAGCAATCCCTCAACAGTTCCCAGAACACTTACTAAAGTCAAACTCTTCATTGCATAATTAAAATTGGATTGAGATTGAGttgtaggtgctttcagcagtggTAGACACCTTTCTATCACTCCCCACtgttgtcaaagtcgctcagatccttacacaatttttcctgcttctaacacatcaactttttattattttattatttttgtcatttagaagacactcttatccagggcagcttacatttgtacccatttatacagctgggcatttttacTAAGTAAAGTATCTtagtacaacagcactgcccccaTTCCAGTGCTTTGAGGAcaaactttgaggacaaaatgttcacttgctgcctaatatatcccacccactgacaggtgccatgataacgagattatcagtgttattcacttcacctgtcagtggtcataatgttatggatgatAGTTGTATATTGTGTAATGCATATGTAAAGCACCTATATATAGAGTgccttgcaaatgtattcagacccctgatcaatgaattactgaattacaaatggtacattgaatacttatgcacgcaccatatttcagttttttatatttcttacaaatatttcccaacattaaaccaatgtcaccttacaataatttgattttgagtttcagtgtttgaaaacaaaatatcaaacagtCAAACAATTTGAGAATTGGTCAGgtgtctgaatacttttgcaaggcaccatatatgtatatattgtaaaatatagaaGCACCATGTTACATCCATTAcctttaatgtatataaaagaaaatatataacatggactaaattaaaaaaagccaaGTTGTCCAAATGACAACCACCCTTGCTTGTTAGTTGAATAAAAATTCCTAATCAATCATTCTTCACTTTTCCATATAGTATATATAAGTGGtaagttttaattttcttcagacCTAGACCTGTAACTGTGAATTGTAATAAGACATCATTCAAGATTTTTAAATGCCAGGCAAGAcatataaaacatcttaaacagAACCGTTGAAGTTCAAAATACAAGTGTGATGGAAGAGTCCAAAGCCAGGAGAatgatacattatacattttatggacattttccaAATATGTTAAGCTGTCTGGATCTTTACAATATGATTTGTTCAATCAAGAGAGcttgtaaataatgaataaccAATTACTACAGTCCTCTCCCCAGGAAACAGGAAGTTGCACAGACCTTGTTTTGTCTGGGTAATGCGAAGCTGCACACATACTTTGCAGATACACAGCTGACATTCAAGAGAAACAGACAAACTGGAACAATACTGTGAACACATACTGATAGAGATTGTCTTATCTGTTGACTGTGTAATTGGTTCAGGAACACATTCCCAGTTTCCACAATAAAGGCACTGCTGAACTTCCCCCACACAATCTGCTACTGGGTGGGACCCGGCTGGACAGTTTGCTGGTGTGGAAAGAAGGCATTTGAGATAGGAAGAAATGCACAGGACCTGAGGACAGCTCTGAAGCTGATTGAAACTGTGGCAATGGTGACTGTTACCTGTACCTTCCTCCTGAGCTGCCAAACACAAGAGTTTCCAGAATGAGAGACAGAAAGGGGGAAGTGTCCACACAGTATGAGATGGGGAGATGCACACTGCATGGCTGGCCATGACATGTTCCATCAGGGGTTTCGATCTCAGAAGAAATGGCAACTCGGCCTCTTAGTACATGGGAGACTGCAAGGAGACACGTGGTCTATCAAACCCCCAGGCTGAGGctgtgataatctcagccaaaatactggaagtcatttgaagatatcttgaaatgatttacagatatctcaaaatgaataggaagtcatttgcagatatctctaaatcacataaagatatcttgaaatgcatttagagatatctctaaatgattatttggcttgccatacagcagggAGACCGGtgataaataatgcacattttctggGAGTGCTACCATGTAATGTCTGTGCCACATCCTTTGGGGCAGGTCTCACTTCAGTGCTCCACTCCTCAACAGAAACAAAGGGGAAGGGgctgattgtgtttttgtacattAAGTTGGTATGTTTACAGAATAAAAGGCCCTATGACAGAATTTGAAGAGGCCTGATAATACTATGGGAGATTTGAGGATACACACAGGGTCTCATAATGTATACAAACACTATGCTAAAAAAGGAAGATCTACTTCCTTGTCTCCATGGCCATCTGAAAACTGATTGTAACCAATGCGGTCAACATCAAACTGATACCGGTGTTTCAAACAATGCAATATGAGGccggagggagagggaaggggatAGGAGGTCCTACTCTATCTTGGCCAAAAGGCAGCTGACCAGCTTCTGCAGGTCCTTTGCCCTCATCTTGGCAGTCTGGAGCACCTCCTCATGATTGGCCTTCTGCTTGCTGTTGTAGTCCATCACTGCCTTGTTGGTGATGAGTGACAGGCCAAACACCCTCATGCCACAGTGCCTGGCCATAACCACCTCGGGCACAGTGCTcatg

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

RNA

RNA id representative length rna type GC content exon number start site end site
TU78718 True 2632 lncRNA 0.39 2 17848158 17851113

Neighbor

gene id symbol gene type direction distance location
AMCG00020389 NA coding downstream 31270 17813315 ~ 17816888 (-)
AMCG00020390 NA coding downstream 37511 17805531 ~ 17810647 (-)
AMCG00020391 NA coding downstream 53659 17775984 ~ 17794499 (-)
AMCG00020392 NA coding downstream 86278 17708113 ~ 17761880 (-)
AMCG00020385 necab2,LOC106936069 coding downstream 174483 17659861 ~ 17673675 (-)
AMCG00020397 NA coding upstream 75399 17926512 ~ 17930590 (-)
AMCG00020398 NA coding upstream 99221 17950334 ~ 17955926 (-)
AMCG00020400 NA coding upstream 130282 17981395 ~ 17984641 (-)
AMCG00020402 NA coding upstream 178260 18029373 ~ 18039986 (-)
AMCG00020401 NA coding upstream 199720 18050833 ~ 18055929 (-)
G62770 pard6a,LOC108250860,LOC106523998,LOC107101591 non-coding downstream 477712 17364823 ~ 17370446 (-)
G62715 NA non-coding downstream 672323 17120154 ~ 17175835 (-)
G62675 NA non-coding downstream 828606 17018790 ~ 17019552 (-)
G62660 NA non-coding downstream 857444 16990267 ~ 16990714 (-)
G62659 NA non-coding downstream 858874 16987319 ~ 16989284 (-)
G62951 cnot1 non-coding upstream 117120 17968233 ~ 17969691 (-)
G62981 NA non-coding upstream 286367 18137480 ~ 18138298 (-)
G63015 NA non-coding upstream 332895 18184008 ~ 18186050 (-)
G63057 NA non-coding upstream 506712 18357825 ~ 18358910 (-)
G63092 NA non-coding upstream 546354 18397467 ~ 18398731 (-)
G62853 necab2 other downstream 221969 17610664 ~ 17626189 (-)
AMCG00020346 nup93,LOC103368977 other downstream 1030391 16794996 ~ 16817767 (-)
G62618 NA other downstream 1054991 16792866 ~ 16793167 (-)
AMCG00020336 NA other downstream 1223188 16616323 ~ 16624970 (-)
G62421 LOC103138816,LOC103466733,LOC108251456 other downstream 1572585 16272451 ~ 16275573 (-)
AMCG00020403 NA other upstream 136068 17987181 ~ 18015862 (-)
G62961 NA other upstream 155055 18006168 ~ 18039960 (-)
AMCG00020446 cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 other upstream 2437457 20288570 ~ 20299843 (-)
G63464 NA other upstream 3461089 21312202 ~ 21312605 (-)
AMCG00020471 NA other upstream 4279729 22130842 ~ 22132737 (-)

Expression


Co-expression Network