G62909


Basic Information

Item Value
gene id G62909
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 17954323 ~ 17955274 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU78749
CCTCGTCGTCGTTTGTTGCATATTGTTTATCACCCGAAAACGAGTAGCCCACACCTGCCGGGGACTCCAGGTACAATACATTGGCGATTTGATTCCAGCTGAATTCATTGCGGTACAGAGTGGCACCGTCGTCATTCACCTGCCAGGAAGGAAACCGTTCTCAGTTTGCCCCCCAAATTAAACCAATCATGTGCGGCATTTTACAGCTGGATAAACATTGATAAATATTGTAAAGCATTACGTGGAAAGGTCCGTTCTCCGACAAGAAGCCATCGAGAGAGCTGCAGCCCGGACCGCCGTTCAACCACAACACAAGCGGGTCTTCGAGCGGGTCTCTCTGGGAGGTCACGAACCGGGGCTTGCTTGCAAGTAGCCGGACCATTGCCTGAAATTCGGTTTGAAGGTGAGCCCAGGCAGACCGATCACTTCATCCGGATCGTAACCAATCTGTGCGGCACAGCTCGAAAGTATTAAGGAGAAGACGAAACTACACAGGAACATGCTTCCCTTGTGCGCTGTCACGTACGCGCAAAACCGGGACAGTGCTTCAATGCACCgggggaaagaaaagagaagttGCTCGCACCAGCTTTCTCAACCCTGT

Function

GO:

id name namespace
GO:0016125 sterol metabolic process biological_process
GO:1902652 secondary alcohol metabolic process biological_process
GO:0008203 cholesterol metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78749 True 604 lncRNA 0.52 2 17954323 17955274

Neighbor

gene id symbol gene type direction distance location
AMCG00020396 NA coding upstream 4264 17945158 ~ 17950059 (+)
AMCG00020394 slc38a7,LOC107707914,LOC107711584,LOC107596460 coding upstream 12487 17930929 ~ 17941836 (+)
AMCG00020393 got2,got2a,LOC107694944,LOC107596935,LOC107738675,LOC107672286,LOC107726360,LOC107707915 coding upstream 27907 17917969 ~ 17926416 (+)
AMCG00020399 NA coding upstream 42183 17905597 ~ 17912140 (+)
AMCG00020387 calb2,LOC106573754,LOC105904495,LOC106560817 coding upstream 65536 17872823 ~ 17888787 (+)
AMCG00020395 cnot1 coding downstream 1434 17956708 ~ 17980551 (+)
AMCG00020406 e2f4,LOC106573204 coding downstream 164439 18119713 ~ 18134812 (+)
AMCG00020405 elmo3,LOC106561448,LOC105018213,LOC107732817,LOC107665726 coding downstream 183613 18138887 ~ 18178120 (+)
AMCG00020412 LOC107707912 coding downstream 226802 18182076 ~ 18186048 (+)
AMCG00020413 LOC107596504,LOC108411466,LOC107753522 coding downstream 231925 18187199 ~ 18195630 (+)
G62781 NA non-coding upstream 451060 17404385 ~ 17503263 (+)
G62681 nudt21 non-coding upstream 908173 17030193 ~ 17046150 (+)
G62680 NA non-coding upstream 918825 17031817 ~ 17035498 (+)
G62654 NA non-coding upstream 964744 16987319 ~ 16989579 (+)
G62617 NA non-coding upstream 1160443 16793664 ~ 16793880 (+)
G62912 NA non-coding downstream 25759 17981033 ~ 17983521 (+)
G62916 NA non-coding downstream 32574 17987848 ~ 18032139 (+)
G62975 NA non-coding downstream 179719 18134993 ~ 18138267 (+)
G62989 NA non-coding downstream 242305 18197579 ~ 18200808 (+)
G62990 kifc3,LOC107670565 non-coding downstream 246570 18201844 ~ 18202070 (+)
G62895 NA other upstream 25419 17928328 ~ 17928904 (+)
AMCG00020371 nutf2 other upstream 482454 17459144 ~ 17471869 (+)
AMCG00020370 NA other upstream 511612 17433642 ~ 17442711 (+)
G62632 NA other upstream 1138466 16814374 ~ 16815857 (+)
AMCG00020331 st3gal2,LOC107686287,LOC106573711,LOC107672232 other upstream 1349665 16582886 ~ 16604658 (+)
AMCG00020408 NA other downstream 103284 18058558 ~ 18065789 (+)
AMCG00020407 NA other downstream 112513 18067787 ~ 18072051 (+)
G63045 NA other downstream 377295 18332569 ~ 18334032 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other downstream 1641929 19597203 ~ 19602324 (+)
AMCG00020438 NA other downstream 1676051 19631325 ~ 19636221 (+)

Expression


Co-expression Network