Gene
RNA
| Item | Value |
|---|---|
| gene id | G62951 |
| gene name | cnot1 |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030127.1 |
| NCBI id | CM030127.1 |
| chromosome length | 42978078 |
| location | 17968233 ~ 17969691 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| symbol | description |
|---|---|
| cnot1 | Predicted to enable estrogen receptor binding activity; molecular adaptor activity; and retinoic acid receptor binding activity. Acts upstream of or within developmental growth. Predicted to be located in cytoplasm and nucleus. Predicted to be part of CCR4-NOT core complex. Predicted to be active in P-body. Human ortholog(s) of this gene implicated in holoprosencephaly. Orthologous to human CNOT1 (CCR4-NOT transcription complex subunit 1). |
| description |
|---|
| PREDICTED: CCR4-NOT transcription complex subunit 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU78802 | True | 1237 | lncRNA | 0.45 | 2 | 17968233 | 17969691 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00020398 | NA | coding | downstream | 12307 | 17950334 ~ 17955926 (-) |
| AMCG00020397 | NA | coding | downstream | 37643 | 17926512 ~ 17930590 (-) |
| AMCG00020389 | NA | coding | downstream | 151345 | 17813315 ~ 17816888 (-) |
| AMCG00020390 | NA | coding | downstream | 157586 | 17805531 ~ 17810647 (-) |
| AMCG00020391 | NA | coding | downstream | 173734 | 17775984 ~ 17794499 (-) |
| AMCG00020400 | NA | coding | upstream | 11704 | 17981395 ~ 17984641 (-) |
| AMCG00020402 | NA | coding | upstream | 59682 | 18029373 ~ 18039986 (-) |
| AMCG00020401 | NA | coding | upstream | 81142 | 18050833 ~ 18055929 (-) |
| AMCG00020404 | NA | coding | upstream | 101605 | 18071296 ~ 18079151 (-) |
| AMCG00020411 | NA | coding | upstream | 119408 | 18089099 ~ 18092504 (-) |
| G62880 | NA | non-coding | downstream | 117120 | 17848158 ~ 17851113 (-) |
| G62770 | pard6a,LOC108250860,LOC106523998,LOC107101591 | non-coding | downstream | 597787 | 17364823 ~ 17370446 (-) |
| G62715 | NA | non-coding | downstream | 792398 | 17120154 ~ 17175835 (-) |
| G62675 | NA | non-coding | downstream | 948681 | 17018790 ~ 17019552 (-) |
| G62660 | NA | non-coding | downstream | 977519 | 16990267 ~ 16990714 (-) |
| G62981 | NA | non-coding | upstream | 167789 | 18137480 ~ 18138298 (-) |
| G63015 | NA | non-coding | upstream | 214317 | 18184008 ~ 18186050 (-) |
| G63057 | NA | non-coding | upstream | 388134 | 18357825 ~ 18358910 (-) |
| G63092 | NA | non-coding | upstream | 427776 | 18397467 ~ 18398731 (-) |
| G63096 | NA | non-coding | upstream | 466834 | 18436525 ~ 18436939 (-) |
| G62853 | necab2 | other | downstream | 342044 | 17610664 ~ 17626189 (-) |
| AMCG00020346 | nup93,LOC103368977 | other | downstream | 1150466 | 16794996 ~ 16817767 (-) |
| G62618 | NA | other | downstream | 1175066 | 16792866 ~ 16793167 (-) |
| AMCG00020336 | NA | other | downstream | 1343263 | 16616323 ~ 16624970 (-) |
| G62421 | LOC103138816,LOC103466733,LOC108251456 | other | downstream | 1692660 | 16272451 ~ 16275573 (-) |
| AMCG00020403 | NA | other | upstream | 17490 | 17987181 ~ 18015862 (-) |
| G62961 | NA | other | upstream | 36477 | 18006168 ~ 18039960 (-) |
| AMCG00020446 | cssa11h16orf87,cunh16orf87,clg02h16orf87,zgc:92818,LOC106587296,LOC103043940,LOC107757775 | other | upstream | 2318879 | 20288570 ~ 20299843 (-) |
| G63464 | NA | other | upstream | 3342511 | 21312202 ~ 21312605 (-) |
| AMCG00020471 | NA | other | upstream | 4161151 | 22130842 ~ 22132737 (-) |
