G62975


Basic Information

Item Value
gene id G62975
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030127.1
NCBI id CM030127.1
chromosome length 42978078
location 18134993 ~ 18138267 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU78838
tggaaaataaggaaaatacaaaacaaatccatcaaGTTTTTTTTACGTTCAGCTTGGTTGAAGTTGAGCTCAGTCCATAGTGAAATTGAGAACCCGTACATATTTTTTCACTGGTGGTGATATTGTGAATGAAATCATTTTGCATTGTATAACCATAGGCATGTGCAAAGCTGGGTTTATAATGTGAAATGGACAGATTGTTGTAGGTCAATGGAAGGGAACTATCTGAATTGCTAATGGTTGCTTCTGGCTCTGTTCTCCTGAGTGGCTTTGGGAAGGCCCCACTGTAAAATGGCTCTTAGAATAAGCGAACACCAAAAATGCTGGTCCCATATATTatgtgtatataacatcatgtgcTATTGCTTAGGCATGACCAGTCAACTGGAATGCAATAGTGGCAGCAACCAAAAGGCACAAGAGGTGGGGGGAGGGTATGTgaccacagacacagagagtaGGTGTCCTGACAGCAGACCCTGTGAGAGGAATGATAGCATTGGATGAAAGGGGGTGGGCTGACAAACAGAGTGAAGTGCTCTTGGGTCTGTAAAGCGAATAGAAGACTTGCTAATGATCAGGGTCCGAGCTATCCTGCCAGCCATCACTCACCCTGTCGTAGCATGTAGCATGTTAAGATCCGTCCTCTCTTCAGAAGCCCTGAGAGACTGATATTCGTGCCATTAAACTCAAACTTGAAATGTTCTCCTCGCCTGTCAAAAGCTTTCCAGTTCAATTGGGCCTTTGTCACTTTTTCTTGCTGCAGTACTGCAACCAGTGAATACATTCTCccctatcacacacacacacacacacacacgcatcaCATGTCCTGAATTCAGCCCTCTTCCTTGCATAAAGGAagctgtgtgtatatagataaGTGCATACATGGTTATGGTGCATGTGTGCTAAATATATTATGTTCCTGTACAGTATGCTCAGAAATCTTGCTGAATACTTTTTGGCCATGCTGCTGCAAACCAATTATAGTGAccaaaatctgttttgtttttttccagtcaaCATCACTACTTTTTAATGTTGATATTCTTTCATAAACTGATTTTCTCCAGATTGTTAATTGAcaaaaaagagaacagaaacTCTGAGCTACAGCACAATAGATTAATCCAACAGATTGGCATACATccctttttcaatttcaaattttaCCTTAAGACTTGTCATAGAAAATAATTTCTATGGTGACACTATGTGCACTTATGGTTTGTGCAGTGACTgtaaagagaggaaaaaaaagttaaattggtaatgtttattttatgtataacaGCAAATTGGAAGTTTAGCATGTTTAGACCCCTGTTAGTTATGTGGgaagcaatatatatttgtgtacatatattttcatctttttgcaagcctatttttattttacctttatcATTCAAAGCACTATAGTTTCTAGTTgccatgtctgtttttgaaaagacTGTGAGTTATGTGACAGAAATTGTGCCAAATAGAAGTGTAGCAGACAGTGTTGATTCTTTTTTGTTCATGTCATGCTACTCATTTTGTGACGTGGGGGTGGGTGACAGAGCCAAACAAGGCTGTCTGCCCAGCCTTCAAAAGAGTTTGCTTTAATGGTACAGACAGAAGGTCAGAGTTGTTCAGGGAAGGGACCTGAACTCAATTCCATTTGGTTAGAAGGGCGCGATAACCAAGCCGAGTGAGTTGGAGACCCAGCTGAAAGGGGTTTCGTTCCTTTAAGCCTGTCCGGTTAGCCATTTGCCACTATATTACATGTGCCCTTATATTTCTTTACTTCCAATGTCAGGGTTGCATCTGTGATGtgggaatatttttttattttagcccGTAGGCTTCTAAAATCCTATCTAAAAGTCCCTCTCCATACAgaatactatttttatttttttaaacatatcatTATCTCTCTCATTATCACAGGGaacaaaattataaatctgAATGAGCACCCAAGGGGGATCCCAGTTTGCGATGTTTCATTAGGCTTTTTCTAATCTCTTGGATTCCTGTTGGTAAATCAGCCAGGCTGGTTTACCAGTACAGTGATGCATATTATAAGCTGAGAACTGTGTGTAATGTATCAAccgttttgatttgttttcctttatattttcctttatatcTTGTGGTCCACCTGTGCAACCTCTGTCTAGCATTAGAGCAAGTCGGATTGCTAGACTGACACTTGTTTATTCCTTCAATATACTGCTGTGCCTAAGTGTGGAGCCATTCTCTCCAGTGCACTTCAGTGTTCAGCGCCCATCTTGCCAGCCaactgcattgcattgaaaacaaacttgtACTTGTAAATGTCTGGTATActgtacatgtgttttgtttgtgtttgaaccAATTACACCTTATACTTCATAGACTGCTATATTTCTGGAAGCAAAACTTgaacaaacagttttttttttttgttgggtGCTGGGAAGGGTGACAGGTTGTCTTGTGGGGTagaactgccttttttttttttctttgtcttaaTCAGTAAgacatttttgatttgttttttcaaagttttCTGTATATACTGCCTAATGTATGCTTAATTTCCAAGTCAGGTTTAtccgttttaaaaacaatttgttcaaatgactttgtgtgtgtgtgtgtgagagagagagtgagagtgtgagtgtctgCATACAGAAGTGGTCTTGACTGTCTTGTGAGGGAGTATTAATAAGGTGTTCTCATGAAATATCAATCCCTTGAGAGTcctaaagtatttttaattgcacCTACCTGCTTCTCAGTTGCCGTAgtcctaattaaaaaaaactaggTTCATGATTGTTTCTGTAAATACTACTGTATCATCCGTTTACTATTTTGGCTAGTATccctttttttaagtgtgtgtgtggtaccCATCCATGGTTATCATGCctatgtgcattttaaacaccTAGGTGAATTcatacttttttgtgtttatgccaTTTAATAAGATACTGTtctgtttatatacagtaagcatttatttttatatttgaggaatatacagcatatataaataacttcCATAGGTAGCACCAAGTCATCTCAATATAGCACTTTACAAAAGCAAACCAGCTACACCTCCAGCACTGGTGGGGTACAGTCAGTACACTGAAGCCTTCAGTGTCCAgggaaatcttttttttgttttatgtttttgtttattcttcaaAGGTGAGTTTGTAGAGGCTAAagtatgtaaattaattttgtaacaAACTGGTTCGCTACGGCTATAGTTATTCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78838 True 3275 lncRNA 0.38 1 18134993 18138267

Neighbor

gene id symbol gene type direction distance location
AMCG00020406 e2f4,LOC106573204 coding upstream 181 18119713 ~ 18134812 (+)
AMCG00020395 cnot1 coding upstream 154442 17956708 ~ 17980551 (+)
AMCG00020396 NA coding upstream 184934 17945158 ~ 17950059 (+)
AMCG00020394 slc38a7,LOC107707914,LOC107711584,LOC107596460 coding upstream 193157 17930929 ~ 17941836 (+)
AMCG00020393 got2,got2a,LOC107694944,LOC107596935,LOC107738675,LOC107672286,LOC107726360,LOC107707915 coding upstream 208577 17917969 ~ 17926416 (+)
AMCG00020405 elmo3,LOC106561448,LOC105018213,LOC107732817,LOC107665726 coding downstream 620 18138887 ~ 18178120 (+)
AMCG00020412 LOC107707912 coding downstream 43809 18182076 ~ 18186048 (+)
AMCG00020413 LOC107596504,LOC108411466,LOC107753522 coding downstream 48932 18187199 ~ 18195630 (+)
AMCG00020415 NA coding downstream 200170 18338437 ~ 18358845 (+)
AMCG00020420 NA coding downstream 243876 18382143 ~ 18389911 (+)
G62916 NA non-coding upstream 102854 17987848 ~ 18032139 (+)
G62912 NA non-coding upstream 151472 17981033 ~ 17983521 (+)
G62909 NA non-coding upstream 179719 17954323 ~ 17955274 (+)
G62781 NA non-coding upstream 631730 17404385 ~ 17503263 (+)
G62681 nudt21 non-coding upstream 1088843 17030193 ~ 17046150 (+)
G62989 NA non-coding downstream 59312 18197579 ~ 18200808 (+)
G62990 kifc3,LOC107670565 non-coding downstream 63577 18201844 ~ 18202070 (+)
G62991 NA non-coding downstream 66693 18204960 ~ 18205970 (+)
G62992 NA non-coding downstream 70144 18208411 ~ 18208650 (+)
G62993 NA non-coding downstream 71871 18210138 ~ 18210377 (+)
AMCG00020407 NA other upstream 62942 18067787 ~ 18072051 (+)
AMCG00020408 NA other upstream 69204 18058558 ~ 18065789 (+)
G62895 NA other upstream 206089 17928328 ~ 17928904 (+)
AMCG00020371 nutf2 other upstream 663124 17459144 ~ 17471869 (+)
AMCG00020370 NA other upstream 692282 17433642 ~ 17442711 (+)
G63045 NA other downstream 194302 18332569 ~ 18334032 (+)
AMCG00020439 LOC107696663,LOC107556242,LOC107746488,LOC107726063 other downstream 1458936 19597203 ~ 19602324 (+)
AMCG00020438 NA other downstream 1493058 19631325 ~ 19636221 (+)
AMCG00020470 NA other downstream 3997101 22135368 ~ 22142198 (+)
AMCG00020487 NA other downstream 4217907 22356174 ~ 22409493 (+)

Expression


Co-expression Network